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Zoomed into a clade of 2 proteins, or see all 240 proteins. Position numbering is from BT2157.

Comment: DUF1080 is a family of hydrolases and includes putative 3-ketoglycoside hydrolases. The putative active site was identified from the structure of BT2157 (PDB:3osd). In the tree, BT2157 and other 3-ketoglycoside hydrolases are colored green, and endoglucanase THTE_1561 is in red. These members of DUF1080 were taken from MicrobesOnline (using hits to PFam PF06439.11 with 80 bits or higher), clustered at 60% identity to reduce the number of sequences, and aligned using hmmalign.

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Highlight proteins:

5848961_43_276: single domain, from Caulobacter crescentus NA1000 (has NEQ) 7094637_39_268: single domain, from Sphingomonas wittichii RW1 (has NEQ) BT2157 has N at position 134 (alignment position 385)N134 5848961_43_276 has N87 EQ 7094637_39_268 has N86 EQ 5848961_43_276 and 1 similar proteins have N aligning to 134N BT2157 has E at position 164 (alignment position 438)E164 5848961_43_276 has N E111 Q 7094637_39_268 has N E110 Q 5848961_43_276 and 1 similar proteins have E aligning to 164E BT2157 has Q at position 166 (alignment position 440)Q166 5848961_43_276 has NE Q113 7094637_39_268 has NE Q112 5848961_43_276 and 1 similar proteins have Q aligning to 166Q 5848961_43_276: single domain, from Caulobacter crescentus NA1000 5848961_43_2765848961_43_276: single domain, from Caulobacter crescentus NA1000 7094637_39_268: single domain, from Sphingomonas wittichii RW1 7094637_39_2687094637_39_268: single domain, from Sphingomonas wittichii RW1 5848961_43_276: single domain, from Caulobacter crescentus NA1000 (has NEQ)5848961_43_276 single domain, from Caulobacter crescentus NA1000 7094637_39_268: single domain, from Sphingomonas wittichii RW1 (has NEQ)7094637_39_268 single domain, from Sphingomonas wittichii RW1 0.2 /site amino acids:gapgap-alaninealanineAcysteinecysteineCaspartateaspartateDglutamateglutamateEphenylalaninephenylalanineFglycineglycineGhistidinehistidineHisoleucineisoleucineIlysinelysineKleucineleucineLmethioninemethionineMasparagineasparagineNprolineprolinePglutamineglutamineQargininearginineRserineserineSthreoninethreonineTvalinevalineVtryptophantryptophanWtyrosinetyrosineY download SVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory