Sites on a Tree

 

Download tree, alignment (240 x 716), positions, or descriptions, or see permanent link to this page, or start over.

Upload descriptions:
The table should be tab-delimited with the sequence identifier in the 1st column and the description in the 2nd column. Optionally, add fields named color and URL.

No functional positions to show from BioLiP or SwissProt.

Or see filtered positions, see all positions, or choose positions.

Comment: DUF1080 is a family of hydrolases and includes putative 3-ketoglycoside hydrolases. The putative active site was identified from the structure of BT2157 (PDB:3osd). In the tree, BT2157 and other 3-ketoglycoside hydrolases are colored green, and endoglucanase THTE_1561 is in red. These members of DUF1080 were taken from MicrobesOnline (using hits to PFam PF06439.11 with 80 bits or higher), clustered at 60% identity to reduce the number of sequences, and aligned using hmmalign.

Find sequence pattern:

Highlight proteins:

0.752 0.825 4909907_81_246: single domain, from Gemmata obscuriglobus UQM 2246 11269095_78_293: single domain, from Isosphaera pallida IS1B, ATCC 43644 0.641 10356726_29_240: single domain, near sugar dehydrogenase, from Coraliomargarita akajimensis DSM 45221 4615506_175_363: with redox domain, from Lentisphaera araneosa HTCC2155 0.5 /site single domain, from Gemmata obscuriglobus UQM 2246 4909907_81_246 single domain, from Gemmata obscuriglobus UQM 2246 single domain, from Isosphaera pallida IS1B, ATCC 43644 11269095_78_293 single domain, from Isosphaera pallida IS1B, ATCC 43644 single domain, near sugar dehydrogenase, from Coraliomargarita akajimensis DSM 45221 10356726_29_240 single domain, near sugar dehydrogenase, from Coraliomargarita akajimensis DSM 45221 with redox domain, from Lentisphaera araneosa HTCC2155 4615506_175_363 with redox domain, from Lentisphaera araneosa HTCC2155 download SVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory