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Comment: DUF1080 is a family of hydrolases and includes putative 3-ketoglycoside hydrolases. The putative active site was identified from the structure of BT2157 (PDB:3osd). In the tree, BT2157 and other 3-ketoglycoside hydrolases are colored green, and endoglucanase THTE_1561 is in red. These members of DUF1080 were taken from MicrobesOnline (using hits to PFam PF06439.11 with 80 bits or higher), clustered at 60% identity to reduce the number of sequences, and aligned using hmmalign.

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Highlight proteins:

0.000 0.068 556011_29_219: tandem domain, from Pirellula sp. 1 10359233_59_249: tandem domain, from Coraliomargarita akajimensis DSM 45221 0.952 4615012_42_228: single domain, near sugar dehydrogenase, from Lentisphaera araneosa HTCC2155 0.941 554419_49_246: with other domain, from Pirellula sp. 1 559162_54_228: tandem domain, from Pirellula sp. 1 0.5 /site tandem domain, from Pirellula sp. 1 556011_29_219 tandem domain, from Pirellula sp. 1 tandem domain, from Coraliomargarita akajimensis DSM 45221 10359233_59_249 tandem domain, from Coraliomargarita akajimensis DSM 45221 single domain, near sugar dehydrogenase, from Lentisphaera araneosa HTCC2155 4615012_42_228 single domain, near sugar dehydrogenase, from Lentisphaera araneosa HTCC2155 with other domain, from Pirellula sp. 1 554419_49_246 with other domain, from Pirellula sp. 1 tandem domain, from Pirellula sp. 1 559162_54_228 tandem domain, from Pirellula sp. 1 download SVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory