Sites on a Tree

 

Download tree, alignment (240 x 716), positions, or descriptions, or see permanent link to this page, or start over.

Upload descriptions:
The table should be tab-delimited with the sequence identifier in the 1st column and the description in the 2nd column. Optionally, add fields named color and URL.

No functional positions to show from BioLiP or SwissProt.

Or see filtered positions, see all positions, or choose positions.

Comment: DUF1080 is a family of hydrolases and includes putative 3-ketoglycoside hydrolases. The putative active site was identified from the structure of BT2157 (PDB:3osd). In the tree, BT2157 and other 3-ketoglycoside hydrolases are colored green, and endoglucanase THTE_1561 is in red. These members of DUF1080 were taken from MicrobesOnline (using hits to PFam PF06439.11 with 80 bits or higher), clustered at 60% identity to reduce the number of sequences, and aligned using hmmalign.

Find sequence pattern:

Highlight proteins:

0.923 0.774 2221882_149_317: single domain, from Solibacter usitatus Ellin6076 6000697_153_324: single domain, from Verrucomicrobium spinosum DSM 4136 0.030 2224728_148_318: single domain, from Solibacter usitatus Ellin6076 11127748_199_365: single domain, from Aquiflexum balticum BA160, DSM 16537 0.5 /site single domain, from Solibacter usitatus Ellin6076 2221882_149_317 single domain, from Solibacter usitatus Ellin6076 single domain, from Verrucomicrobium spinosum DSM 4136 6000697_153_324 single domain, from Verrucomicrobium spinosum DSM 4136 single domain, from Solibacter usitatus Ellin6076 2224728_148_318 single domain, from Solibacter usitatus Ellin6076 single domain, from Aquiflexum balticum BA160, DSM 16537 11127748_199_365 single domain, from Aquiflexum balticum BA160, DSM 16537 download SVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory