Sites on a Tree

 

Searching for up to 100 curated homologs for 14264 FitnessBrowser__Keio:14264 (865 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

Removed hits that are identical to the query, leaving 4

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

acnB / Q8ZRS8 aconitate hydratase 2 (EC 4.2.1.99) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
ACNB_SALTY / Q8ZRS8 Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 2 papers)
    97% identity, 100% coverage of query (1675 bits)

acnB / P56418 aconitase (EC 4.2.1.3) from Helicobacter pylori (strain ATCC 700392 / 26695) (see paper)
    61% identity, 98% coverage of query (1055 bits)

A0A2X5AHR8 aconitate hydratase (EC 4.2.1.3) from Helicobacter pylori (see paper)
    61% identity, 98% coverage of query (1054 bits)

Dshi_2060 Aconitate hydratase (EC 4.2.1.3) from Dinoroseobacter shibae DFL-12
    31% identity, 96% coverage of query (325 bits)

Build an alignment

Build an alignment for 14264 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory