Sites on a Tree

 

Searching for up to 100 curated homologs for 14312 FitnessBrowser__Keio:14312 (274 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

Removed hits that are identical to the query, leaving 7

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q8X8Y7 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) from Escherichia coli (see paper)
    100% identity, 100% coverage of query (559 bits)

DAPD_UNKP / P56220 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 from Unknown prokaryotic organism (see paper)
1kgqA / P56220 Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with l-2-aminopimelate and succinamide-coa (see paper)
    95% identity, 100% coverage of query (519 bits)

3tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2-amino- 6-oxopimelate and coenzyme a
    95% identity, 100% coverage of query (519 bits)

2tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2- aminopimelate and coenzyme a
    95% identity, 100% coverage of query (519 bits)

1kgtA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with pimelate and succinyl-coa
    95% identity, 100% coverage of query (519 bits)

dapD / CAA08875.1 DapD from Bordetella pertussis (see paper)
    72% identity, 98% coverage of query (384 bits)

P31852 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) from Pseudomonas amygdali pv. tabaci (see paper)
    53% identity, 97% coverage of query (259 bits)

Build an alignment

Build an alignment for 14312 and 7 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory