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Searching for up to 100 curated homologs for 14962 FitnessBrowser__Keio:14962 (371 a.a.)

Found high-coverage hits (≥70%) to 13 curated proteins.

Removed hits that are identical to the query, leaving 12

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

2g8sA / P75804 Crystal structure of the soluble aldose sugar dehydrogenase (asd) from escherichia coli in the apo-form (see paper)
    100% identity, 94% coverage of query (707 bits)

7cdyA Crystal structure of glucose dehydrogenase
    67% identity, 92% coverage of query (484 bits)

hcuB / BAC81751.1 hydrophobic compound transport factor from Pseudomonas aeruginosa (see paper)
    61% identity, 93% coverage of query (440 bits)

7cgzA Glucose dehydrogenase
    61% identity, 92% coverage of query (432 bits)

2ismB / Q5SKS3 Crystal structure of the putative oxidoreductase (glucose dehydrogenase) (ttha0570) from thermus theromophilus hb8
    34% identity, 91% coverage of query (166 bits)

I7A144 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus (see paper)
    34% identity, 91% coverage of query (164 bits)

Q8ZUN8 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum (see 2 papers)
    33% identity, 98% coverage of query (143 bits)

3a9gA / Q8ZUN8 Crystal structure of pqq-dependent sugar dehydrogenase apo-form (see paper)
    35% identity, 91% coverage of query (137 bits)

3a9hA Crystal structure of pqq-dependent sugar dehydrogenase holo-form
    35% identity, 91% coverage of query (137 bits)

3dasA / Q9Z571 Structure of the pqq-bound form of aldose sugar dehydrogenase (adh) from streptomyces coelicolor
    31% identity, 74% coverage of query (106 bits)

Build an alignment

Build an alignment for 14962 and 10 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

sndH / Q402A8 L-sorbosone dehydrogenase 1 from Ketogulonicigenium vulgare (see paper)
    26% identity, 91% coverage of query (94.4 bits)

gdhB / P13650 soluble quinoprotein glucose dehydrogenase monomer (EC 1.1.99.35) from Acinetobacter calcoaceticus (see 6 papers)
DHGB_ACICA / P13650 Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus (see 2 papers)
P13650 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2); soluble quinoprotein glucose dehydrogenase (EC 1.1.99.35) from Acinetobacter calcoaceticus (see 9 papers)
    31% identity, 70% coverage of query (93.6 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory