Searching for up to 100 curated homologs for 14979 FitnessBrowser__Keio:14979 (370 a.a.)

Found high-coverage hits (≥70%) to 24 curated proteins.

Removed hits that are identical to the query, leaving 19

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

7oyxB E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d y87s f88y s247d in complex with spermidine
    99% identity, 92% coverage of query (694 bits)

7oywA / P31133 E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88l s247d in complex with spermidine (see paper)
    98% identity, 92% coverage of query (689 bits)

7oyvA E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88a s247d in complex with spermidine
    98% identity, 92% coverage of query (686 bits)

SPUD_PSEAB / Q02UB7 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
SPUD_PSEAE / Q9I6J1 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
    56% identity, 100% coverage of query (441 bits)

3ttmA / Q9I6J1 Crystal structure of spud in complex with putrescine (see paper)
    59% identity, 92% coverage of query (432 bits)

SPUE_PSEAE / Q9I6J0 Spermidine-binding periplasmic protein SpuE from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
    55% identity, 97% coverage of query (417 bits)

3ttnA / Q9I6J0 Crystal structures of polyamine receptors spud and spue from pseudomonas aeruginosa (see paper)
    56% identity, 91% coverage of query (400 bits)

PAGBP_PSEAE / Q9I0P5 Putrescine/agmatine-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
    47% identity, 92% coverage of query (353 bits)

PCABP_PSEAE / Q9HY16 Putrescine/cadaverine-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
    33% identity, 96% coverage of query (192 bits)

PotD / b1123 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
PotD / P0AFK9 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11) from Escherichia coli (strain K12) (see 11 papers)
POTD_ECOLI / P0AFK9 Spermidine/putrescine-binding periplasmic protein; SPBP from Escherichia coli (strain K12) (see paper)
TC 3.A.1.11.1 / P0AFK9 Spermidine/putrescine-binding periplasmic protein PotD aka B1123, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli (see 8 papers)
potD spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein PotD from Escherichia coli K12 (see 9 papers)
    36% identity, 85% coverage of query (189 bits)

1poy1 / P0AFK9 Spermidine/putrescine-binding protein complexed with spermidine (dimer form) (see paper)
    36% identity, 84% coverage of query (188 bits)

7xjnA / Q9KS37 Structure of vcpotd1 in complex with norspermidine
    35% identity, 84% coverage of query (181 bits)

TC 3.A.1.11.7 / Q97Q45 Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
    30% identity, 91% coverage of query (171 bits)

4eqbA 1.5 angstrom crystal structure of spermidine/putrescine abc transporter substrate-binding protein potd from streptococcus pneumoniae strain canada mdr_19a in complex with calcium and hepes
    31% identity, 85% coverage of query (167 bits)

Build an alignment

Build an alignment for 14979 and 14 homologs with ≥ 30% identity

Or download the sequences

Additional hits (identity < 30%)

Q8YM93 ABC-type polyamine transporter (subunit 2/3) (EC 7.6.2.11) from Nostoc sp. PCC 7120 = FACHB-418 (see paper)
    29% identity, 95% coverage of query (160 bits)

A0A116LEI2 ABC-type polyamine transporter (subunit 1/4) (EC 7.6.2.11) from Streptococcus suis (see paper)
    30% identity, 88% coverage of query (148 bits)

O83661 ABC-type putrescine transporter (EC 7.6.2.16) from Treponema pallidum (see paper)
    28% identity, 78% coverage of query (122 bits)

NSPS_VIBCH / Q9KU25 Norspermidine sensor; Norspermidine-binding protein from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see paper)
    28% identity, 87% coverage of query (84.3 bits)

YdcS / b1440 putative ABC transporter periplasmic binding protein / polyhydroxybutyrate synthase from Escherichia coli K-12 substr. MG1655 (see 12 papers)
ydcS / P76108 putative ABC transporter periplasmic binding protein / polyhydroxybutyrate synthase (EC 2.3.1.304) from Escherichia coli (strain K12) (see 12 papers)
YDCS_ECOLI / P76108 Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein; Poly-3-hydroxybutyrate synthase; PHB synthase; cPHB synthase; EC 2.3.1.- from Escherichia coli (strain K12) (see 3 papers)
    27% identity, 75% coverage of query (79.7 bits)

Or start over