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Searching for up to 100 curated homologs for 15544 FitnessBrowser__Keio:15544 (447 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

Removed hits that are identical to the query, leaving 7

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

2rjbA / A0A0H2UZX2 Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
    94% identity, 100% coverage of query (842 bits)

2rjbD / A0A0H2UZX2 Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
    85% identity, 97% coverage of query (716 bits)

2rjbC Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
    82% identity, 99% coverage of query (699 bits)

PP_5260 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) from Pseudomonas putida KT2440
ydcJ / Q88CC1 2-oxoadipate dioxygenase/decarboxylase (EC 1.13.11.93) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
HGLS_PSEPK / Q88CC1 2-oxoadipate dioxygenase/decarboxylase; 2-hydroxyglutarate synthase; EC 1.13.11.93 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
    58% identity, 99% coverage of query (497 bits)

AO356_01105 putative hydrolase, required for lysine catabolism from Pseudomonas fluorescens FW300-N2C3
    57% identity, 98% coverage of query (496 bits)

SMc04383 putative hydrolase, required for lysine catabolism from Sinorhizobium meliloti 1021
    56% identity, 98% coverage of query (487 bits)

6w1hA / Q88CC1 Crystal structure of the hydroxyglutarate synthase in complex with 2- oxoadipate from pseudomonas putida (see paper)
    58% identity, 99% coverage of query (487 bits)

Build an alignment

Build an alignment for 15544 and 7 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory