Sites on a Tree

 

Searching for up to 100 curated homologs for 16471 FitnessBrowser__Keio:16471 (442 a.a.)

Found high-coverage hits (≥70%) to 9 curated proteins.

Removed hits that are identical to the query, leaving 7

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

SDHD_ECOL6 / Q8FFF4 D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see 3 papers)
    99% identity, 100% coverage of query (902 bits)

Q8ZL08 D-Serine ammonia-lyase (EC 4.3.1.18) from Salmonella enterica subsp. enterica serovar Typhimurium (see paper)
    89% identity, 100% coverage of query (792 bits)

3r0xA / Q8ZL08 Crystal structure of selenomethionine incorporated apo d-serine deaminase from salmonella tyhimurium (see paper)
    89% identity, 100% coverage of query (788 bits)

PfGW456L13_3648 D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens GW456-L13
    67% identity, 99% coverage of query (556 bits)

Q9HYN9 D-Serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas aeruginosa (see paper)
    64% identity, 98% coverage of query (552 bits)

AO353_25210 D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens FW300-N2E3
    63% identity, 100% coverage of query (545 bits)

Q4A041 D-Serine ammonia-lyase (EC 4.3.1.18) from Staphylococcus saprophyticus (see paper)
    54% identity, 98% coverage of query (438 bits)

Build an alignment

Build an alignment for 16471 and 7 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory