Sites on a Tree

 

Searching for up to 100 curated homologs for 16562 FitnessBrowser__Keio:16562 (759 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

Removed hits that are identical to the query, leaving 4

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

dme / GI|2582193 malate dehydrogenase (decarboxylating); EC 1.1.1.39 from Sinorhizobium meliloti (see 3 papers)
    59% identity, 99% coverage of query (863 bits)

PGA1_c11910 Malate dehydrogenase (decarboxylating) (EC 1.1.1.39) from Phaeobacter inhibens BS107
    55% identity, 98% coverage of query (835 bits)

A4F2S6 malate dehydrogenase (decarboxylating) (EC 1.1.1.39) from Rhodopseudomonas palustris (see paper)
    57% identity, 99% coverage of query (789 bits)

6zngF / Q6MM14,Q6MM15 Maeb full-length acetyl-coa bound state (see paper)
    49% identity, 99% coverage of query (699 bits)

Build an alignment

Build an alignment for 16562 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory