Sites on a Tree

 

Searching for up to 100 curated homologs for 16749 FitnessBrowser__Keio:16749 (325 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

Removed hits that are identical to the query, leaving 4

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

1jr7A / P76621 Crystal structure of gab reveals oxidoreductase fold (see paper)
    98% identity, 96% coverage of query (610 bits)

2r6sA Crystal structure of gab protein
    94% identity, 96% coverage of query (580 bits)

6hl8A Crystal structure of the csid glutarate hydroxylase in complex with glutarate
    94% identity, 95% coverage of query (569 bits)

PP_2909 glutarate hydroxylase from Pseudomonas putida KT2440
csiD / Q88IU0 glutarate dioxygenase monomer (EC 1.14.11.64) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
GLAH_PSEPK / Q88IU0 Glutarate 2-hydroxylase; G-2-H; EC 1.14.11.64 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
Q88IU0 glutarate dioxygenase (EC 1.14.11.64) from Pseudomonas putida (see paper)
    68% identity, 100% coverage of query (476 bits)

Build an alignment

Build an alignment for 16749 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory