Sites on a Tree

 

Searching for up to 100 curated homologs for 16769 FitnessBrowser__Keio:16769 (330 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

OUSX_DICD3 / E0SCY3 Glycine betaine-binding periplasmic protein OusX from Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)) (see paper)
    76% identity, 100% coverage of query (527 bits)

A0A077T7U5 ABC-type quaternary amine transporter (subunit 2/3) (EC 7.6.2.9) from Vibrio anguillarum serotype O1 (see paper)
    66% identity, 97% coverage of query (446 bits)

Build an alignment

Build an alignment for 16769 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

TC 3.A.1.12.6 / Q9KKE3 HutX aka HISX, component of Uptake system for hisitidine, proline, proline-betaine and glycine-betaine from Rhizobium meliloti (Sinorhizobium meliloti) (see paper)
    26% identity, 76% coverage of query (77.0 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory