Sites on a Tree

 

Searching for up to 100 curated homologs for 16884 FitnessBrowser__Keio:16884 (215 a.a.)

Found high-coverage hits (≥70%) to 33 curated proteins.

Removed hits that are identical to the query, leaving 30

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

1dzuP L-fuculose-1-phosphate aldolase from escherichia coli mutant t26a
    100% identity, 97% coverage of query (432 bits)

BWI76_RS22915 L-fuculose phosphate aldolase (EC 4.1.2.17) from Klebsiella michiganensis M5al
    92% identity, 100% coverage of query (413 bits)

7x78A L-fuculose 1-phosphate aldolase
    89% identity, 96% coverage of query (380 bits)

ALD2_ECO45 / B7MMH7 5-methylthioribulose-1-phosphate/5-deoxyribulose-1-phosphate aldolase; EC 4.1.2.62 from Escherichia coli O45:K1 (strain S88 / ExPEC) (see paper)
    58% identity, 99% coverage of query (264 bits)

ald2 / J7RCN0 5-deoxyribulose 1-phosphate aldolase (EC 4.1.2.62) from Escherichia coli (see paper)
    58% identity, 99% coverage of query (263 bits)

ald2 / Q2RXI1 5-(methylthio)ribulose-1-phosphate aldolase (EC 4.1.2.62) from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) (see 2 papers)
ALD2_RHORT / Q2RXI1 5-methylthioribulose-1-phosphate/5-deoxyribulose-1-phosphate aldolase; EC 4.1.2.62 from Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) (see 2 papers)
    52% identity, 97% coverage of query (201 bits)

4c25A / A0A0H2US48 L-fuculose 1-phosphate aldolase (see paper)
    41% identity, 96% coverage of query (155 bits)

drdA / P0DTQ0 5-deoxy-D-ribulose 1-phosphate aldolase (EC 4.1.2.62) from Bacillus thuringiensis serovar kurstaki (strain ATCC 35866 / NRRL B-4488 / HD73) (see paper)
DRDA_BACT7 / P0DTQ0 5-deoxy-D-ribulose 1-phosphate aldolase; 5-deoxyribose disposal aldolase; EC 4.1.2.- from Bacillus thuringiensis serovar kurstaki (strain ATCC 35866 / NRRL B-4488 / HD73) (see paper)
P0DTQ0 5-deoxyribulose 1-phosphate aldolase (EC 4.1.2.62) from Bacillus thuringiensis serovar kurstaki (see paper)
    37% identity, 96% coverage of query (139 bits)

6btgA Crystal structure of deoxyribose-phosphate aldolase bound with dhap from bacillus thuringiensis (see paper)
    36% identity, 94% coverage of query (134 bits)

F8D9F5 D-ribulose 1-phosphate aldolase (EC 4.1.2.17) from Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) (see paper)
    37% identity, 94% coverage of query (134 bits)

CA265_RS08620 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Pedobacter sp. GW460-11-11-14-LB5
    30% identity, 90% coverage of query (82.8 bits)

OTNC_ECOL6 / A0A0H2VA12 3-oxo-tetronate 4-phosphate decarboxylase; EC 4.1.1.104 from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
A0A0H2VA12 3-dehydro-4-phosphotetronate decarboxylase (EC 4.1.1.104) from Escherichia coli (see paper)
    32% identity, 86% coverage of query (82.4 bits)

otnC / Q57199 3-dehydro-4-phosphotetronate decarboxylase (EC 4.1.1.104) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
OTNC_HAEIN / Q57199 3-oxo-tetronate 4-phosphate decarboxylase; EC 4.1.1.104 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
Q57199 3-dehydro-4-phosphotetronate decarboxylase (EC 4.1.1.104) from Haemophilus influenzae (see paper)
    33% identity, 76% coverage of query (82.0 bits)

YgbL / b2738 putative 3-oxo-tetronate 4-phosphate decarboxylase YgbL from Escherichia coli K-12 substr. MG1655 (see 2 papers)
    32% identity, 86% coverage of query (82.0 bits)

OTNC_PECAS / Q6CZ24 3-oxo-tetronate 4-phosphate decarboxylase; EC 4.1.1.104 from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) (Erwinia carotovora subsp. atroseptica) (see paper)
Q6CZ24 3-dehydro-4-phosphotetronate decarboxylase (EC 4.1.1.104) from Pectobacterium atrosepticum (see paper)
    32% identity, 77% coverage of query (77.4 bits)

Build an alignment

Build an alignment for 16884 and 15 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

MJ1418 / Q58813 fuculose-1-phosphate aldolase subunit (EC 4.1.2.17) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (see paper)
FUCA_METJA / Q58813 L-fuculose phosphate aldolase; L-fuculose-1-phosphate aldolase; EC 4.1.2.17 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see 3 papers)
Q58813 L-fuculose-phosphate aldolase (EC 4.1.2.17) from Methanocaldococcus jannaschii (see paper)
    29% identity, 84% coverage of query (75.9 bits)

OTNC_CUPNH / Q0KBC9 3-oxo-tetronate 4-phosphate decarboxylase; EC 4.1.1.104 from Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) (Ralstonia eutropha) (see paper)
Q0KBC9 3-dehydro-4-phosphotetronate decarboxylase (EC 4.1.1.104) from Cupriavidus necator (see paper)
    28% identity, 84% coverage of query (75.9 bits)

C4B4W3 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum (see paper)
    27% identity, 91% coverage of query (73.6 bits)

6voqA / Q0QC76 Crystal structure of ygbl, a putative aldolase/epimerase/decarboxylase from klebsiella pneumoniae
    29% identity, 85% coverage of query (70.9 bits)

BT1274 L-fuculose-1-phosphate aldolase FucA (4.1.2.17); D-ribulose-1-phosphate aldolase from Bacteroides thetaiotaomicron VPI-5482
    27% identity, 81% coverage of query (64.7 bits)

Q9AGK2 3,4-dihydroxyphthalate decarboxylase (EC 4.1.1.69) from Arthrobacter keyseri (see paper)
    28% identity, 90% coverage of query (64.3 bits)

Echvi_0503 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Echinicola vietnamensis KMM 6221, DSM 17526
    26% identity, 89% coverage of query (63.2 bits)

4xxfA / A0A0J9X279 L-fuculose 1-phosphate aldolase from glaciozyma antarctica pi12 (see paper)
    23% identity, 93% coverage of query (60.1 bits)

MUG14_SCHPO / Q9P5M9 Meiotically up-regulated gene 14 protein from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see 2 papers)
    26% identity, 76% coverage of query (59.3 bits)

novR / Q9L9F0 3-dimethylallyl-4-hydroxyphenylpyruvate oxygenase (EC 1.13.12.23; EC 1.13.11.83) from Streptomyces niveus (see paper)
    25% identity, 71% coverage of query (56.2 bits)

CLOR_STRRC / Q8GHB1 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase; Bifunctional non-heme iron oxygenase; Clorobiocin biosynthesis protein CloR; EC 1.13.11.83; EC 1.13.12.23 from Streptomyces roseochromogenus subsp. oscitans (see 2 papers)
Q8GHB1 4-hydroxy-3-prenylphenylpyruvate oxygenase (EC 1.13.11.83); 4-hydroxy-3-prenylbenzoate synthase (EC 1.13.12.23) from Streptomyces roseochromogenus (see 2 papers)
    25% identity, 71% coverage of query (55.8 bits)

phtC / BAC54162.1 3,4-dihydroxyphthalate decarboxylase from Terrabacter sp. DBF63 (see paper)
    27% identity, 81% coverage of query (55.5 bits)

ADDG_HUMAN / Q9UEY8 Gamma-adducin; Adducin-like protein 70 from Homo sapiens (Human) (see 4 papers)
    27% identity, 73% coverage of query (45.1 bits)

P35611 Alpha-adducin; Erythrocyte adducin subunit alpha from Homo sapiens (Human)
    28% identity, 71% coverage of query (44.7 bits)

ADDG_MOUSE / Q9QYB5 Gamma-adducin; Adducin-like protein 70 from Mus musculus (Mouse) (see paper)
    26% identity, 84% coverage of query (43.9 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory