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Searching for up to 100 curated homologs for 16885 b2801 L-fucose transporter (NCBI) (438 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

Removed hits that are identical to the query, leaving 10

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

N515DRAFT_1918 fructose porter FruP from Dyella japonica UNC79MFTsu3.2
    38% identity, 96% coverage of query (262 bits)

TC 2.A.1.7.5 / Q8XEV7 2-Deoxy-D-ribose porter, DeoP (see 2 papers)
    35% identity, 96% coverage of query (245 bits)

BT1277 L-fucose/D-arabinose symporter FucP from Bacteroides thetaiotaomicron VPI-5482
    33% identity, 92% coverage of query (232 bits)

TC 2.A.1.7.2 / P0C105 Glucose/galactose porter from Brucella abortus (see paper)
    35% identity, 99% coverage of query (224 bits)

gluP / O25788 D-glucose/D-galactose/D-mannose:Na+ symporter from Helicobacter pylori (strain ATCC 700392 / 26695) (see 2 papers)
TC 2.A.1.7.7 / O25788 The Na+-dependent sugar transporter, HP1174 (transports glucose, galactose, mannose and 2-deoxyglucose (Psakis et al. 2009)). (most similar to 2.A.1.7.2; 49% identity) from Helicobacter pylori (see paper)
    36% identity, 94% coverage of query (209 bits)

Sama_0562 D-mannose transporter (MFS superfamily) from Shewanella amazonensis SB2B
    35% identity, 94% coverage of query (194 bits)

Build an alignment

Build an alignment for 16885 and 6 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

Shewana3_3110 N-acetylglucosamine transporter nagP from Shewanella sp. ANA-3
    29% identity, 86% coverage of query (129 bits)

SO3503 N-acetyl glucosamine transporter, NagP from Shewanella oneidensis MR-1
TC 2.A.1.7.8 / Q8EBL0 N-acetylglucosamine porter, NagP from Shewanella oneidensis (see paper)
    29% identity, 89% coverage of query (128 bits)

TC 2.A.1.7.6 / Q07W00 Sucrose permease, ScrT from Shewanella frigidimarina (strain NCIMB 400)
    24% identity, 91% coverage of query (64.3 bits)

Shewana3_0067 sucrose permease scrT from Shewanella sp. ANA-3
    22% identity, 91% coverage of query (47.0 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory