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Searching for up to 100 curated homologs for 17209 FitnessBrowser__Keio:17209 (384 a.a.)

Found high-coverage hits (≥70%) to 7 curated proteins.

Removed hits that are identical to the query, leaving 6

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

AGAS_ECOLX / Q9KIP9 D-galactosamine-6-phosphate deaminase AgaS; Gam-6-P deaminase/isomerase; EC 3.5.99.- from Escherichia coli (see paper)
    100% identity, 100% coverage of query (794 bits)

agaS / Q8XAC2 D-galactosamine-6-phosphate deaminase/isomerase from Escherichia coli O157:H7 (see paper)
AGAS_ECO57 / Q8XAC2 D-galactosamine-6-phosphate deaminase AgaS; Gam-6-P deaminase/isomerase; EC 3.5.99.- from Escherichia coli O157:H7 (see paper)
    99% identity, 100% coverage of query (787 bits)

agaS / A0KYQ7 D-galactosamine-6-phosphate deaminase/isomerase from Shewanella sp. (strain ANA-3) (see paper)
AGAS_SHESA / A0KYQ7 D-galactosamine-6-phosphate deaminase AgaS; GalN-6-P deaminase; Glucosamine-6-phosphate deaminase; GlcN-6-P deaminase; EC 3.5.99.-; EC 3.5.99.6 from Shewanella sp. (strain ANA-3) (see paper)
    45% identity, 96% coverage of query (310 bits)

Build an alignment

Build an alignment for 17209 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

glmD / Q5JDU3 archaeal glucosamine-6-phosphate deaminase subunit (EC 3.5.99.6) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (see paper)
GLMD_THEKO / Q5JDU3 Glucosamine-6-phosphate deaminase; GlcN6P deaminase; EC 3.5.99.6 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
    27% identity, 91% coverage of query (71.6 bits)

2df8A / O58246 Crystal structure of the ph0510 protein from pyrococcus horikoshii ot3 in complex with beta-d-fructopyranose-1-phosphate
    24% identity, 83% coverage of query (57.8 bits)

B4F0F0 glutamine-fructose-6-phosphate transaminase (isomerizing) (EC 2.6.1.16) from Proteus mirabilis (see 2 papers)
    23% identity, 76% coverage of query (46.6 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory