Sites on a Tree

 

Searching for up to 100 curated homologs for 17638 FitnessBrowser__Keio:17638 (157 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Ac3H11_3228 gluconate TRAP transporter, small permease component from Acidovorax sp. GW101-3H11
    35% identity, 76% coverage of query (76.3 bits)

Build an alignment

Build an alignment for 17638 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

Psest_2123 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri RCH2
    29% identity, 80% coverage of query (58.9 bits)

Sama_2210 alpha-ketoglutarate TRAP transporter, small permease component from Shewanella amazonensis SB2B
    28% identity, 73% coverage of query (47.4 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory