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Searching for up to 100 curated homologs for 17707 FitnessBrowser__Keio:17707 (205 a.a.)

Found high-coverage hits (≥70%) to 15 curated proteins.

Removed hits that are identical to the query, leaving 14

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PS417_02455 putative transporter, required for glycine utilization from Pseudomonas simiae WCS417
    56% identity, 100% coverage of query (235 bits)

SO3342 putative transporter, required for L-alanine utilization from Shewanella oneidensis MR-1
    55% identity, 98% coverage of query (223 bits)

AO353_13110 putative transporter, required for glycine utilization from Pseudomonas fluorescens FW300-N2E3
    57% identity, 99% coverage of query (221 bits)

Shewana3_1204 putative transporter, required for glycine and L-alanine utilization from Shewanella sp. ANA-3
    55% identity, 98% coverage of query (221 bits)

Pf6N2E2_3621 putative transporter, required for glycine utilization from Pseudomonas fluorescens FW300-N2E2
    57% identity, 99% coverage of query (220 bits)

PfGW456L13_161 putative transporter, required for glycine utilization from Pseudomonas fluorescens GW456-L13
    56% identity, 99% coverage of query (219 bits)

Psest_1636 putative transporter, required for glycine utilization from Pseudomonas stutzeri RCH2
    47% identity, 96% coverage of query (192 bits)

TC 1.A.62.2.1 / A0M015 Bacterial TRIC family homologue from Gramella forsetii (strain KT0803) (see paper)
    39% identity, 97% coverage of query (150 bits)

SO1319 putative transporter, required for glycine utilization from Shewanella oneidensis MR-1
    40% identity, 95% coverage of query (143 bits)

TC 1.A.62.2.4 / A4WTL9 TRIC family homologue of 213 aas and 7 TMSs; it's high resolution 3-d structure is known (PDB# 5H36). TRIC channels are implicated in Ca2+ signaling and homeostasis from Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
    37% identity, 93% coverage of query (113 bits)

YadS / b0157 PF03458 family protein YadS from Escherichia coli K-12 substr. MG1655 (see 2 papers)
    37% identity, 100% coverage of query (112 bits)

TC 1.A.62.3.1 / Q981D4 Archaeal TRIC family homologue of 205 aas and 7 TMSs from Sulfolobus solfataricus (see paper)
    30% identity, 96% coverage of query (95.9 bits)

PGA1_c00920 putative transporter, required for glycine utilization from Phaeobacter inhibens BS107
    31% identity, 90% coverage of query (84.0 bits)

TC 1.A.62.3.2 / Q9RKM3 UPF0126 of 7 TMSs. Adjacent to genes encoding a putative oligopeptide ABC uptake permease that controls sporulation and actinorhodin production (TC#3.A.1.5.34) from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
    33% identity, 93% coverage of query (73.9 bits)

Build an alignment

Build an alignment for 17707 and 14 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory