Sites on a Tree

 

Searching for up to 100 curated homologs for 17714 FitnessBrowser__Keio:17714 (401 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

Removed hits that are identical to the query, leaving 3

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

gltS / O26036 glutamate:Na+ symporter GltS from Helicobacter pylori (strain ATCC 700392 / 26695) (see 2 papers)
    57% identity, 99% coverage of query (431 bits)

TC 2.A.27.1.2 / P73275 Glutamate:Na+ symporter (see paper)
    41% identity, 98% coverage of query (296 bits)

TC 2.A.27.1.3 / Q9HZ58 Probable L-glutamate/N-acetylglutamate uptake porter, GltS.  Involved in N-acetylglutamate catabolism as a carbon and nitrogen source from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
    41% identity, 96% coverage of query (209 bits)

Build an alignment

Build an alignment for 17714 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory