Sites on a Tree

 

Searching for up to 100 curated homologs for 17752 b3693 2-oxo-3-deoxygalactonate kinase (NCBI) (292 a.a.)

Found high-coverage hits (≥70%) to 7 curated proteins.

Removed hits that are identical to the query, leaving 6

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

A6TFZ6 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Klebsiella pneumoniae (see paper)
    82% identity, 100% coverage of query (485 bits)

N515DRAFT_1233 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) from Dyella japonica UNC79MFTsu3.2
    39% identity, 99% coverage of query (173 bits)

DGOK_RHIME / Q92RN7 Probable 2-dehydro-3-deoxygalactonokinase DgoK1; 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase; EC 2.7.1.58 from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
    34% identity, 98% coverage of query (147 bits)

HSERO_RS05160 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) from Herbaspirillum seropedicae SmR1
    36% identity, 97% coverage of query (145 bits)

BPHYT_RS16950 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) from Burkholderia phytofirmans PsJN
    34% identity, 91% coverage of query (142 bits)

lgnF / BAM68209.1 2-keto-3-deoxygalactonate kinase lgnF from Paracoccus laeviglucosivorans (see 2 papers)
    33% identity, 97% coverage of query (130 bits)

Build an alignment

Build an alignment for 17752 and 6 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory