Sites on a Tree

 

Searching for up to 100 curated homologs for 18061 FitnessBrowser__Keio:18061 (514 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

Removed hits that are identical to the query, leaving 4

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

4ki0F / P02916 Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
    99% identity, 96% coverage of query (951 bits)

BWI76_RS01825 maltose ABC transporter, permease component 1 (MalF) from Klebsiella michiganensis M5al
    89% identity, 100% coverage of query (945 bits)

Psest_0864 maltose ABC transporter, permease component 1 (MalF) from Pseudomonas stutzeri RCH2
    51% identity, 94% coverage of query (495 bits)

TC 3.A.1.1.22 / Q9X0T0 MalF1; aka Maltose ABC transporter, permease protein, component of The maltose, maltotriose, mannotetraose (MalE1)/maltose, maltotriose, trehalose (MalE2) porter (Nanavati et al., 2005). For MalG1 (823aas) and MalG2 (833aas), the C-terminal transmembrane domain with 6 putative TMSs is preceded by a single N-terminal TMS and a large (600 residue) hydrophilic region showing sequence similarity to MLP1 and 2 (9.A.14; e-12 & e-7) as well as other proteins from Thermotoga maritima (see paper)
    34% identity, 96% coverage of query (291 bits)

Build an alignment

Build an alignment for 18061 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory