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Searching for up to 100 curated homologs for 18328 FitnessBrowser__Keio:18328 (437 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

Removed hits that are identical to the query, leaving 4

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

GatC / P69831 galactitol-specific PTS enzyme IIC component (EC 2.7.1.200; EC 2.7.1.198) from Escherichia coli (strain K12) (see paper)
PTKC_ECOLI / P69831 PTS system galactitol-specific EIIC component; EIIC-Gat; Galactitol permease IIC component from Escherichia coli (strain K12) (see 4 papers)
P69831 protein-Npi-phosphohistidine-galactitol phosphotransferase (subunit 1/3) (EC 2.7.1.200) from Escherichia coli (see paper)
TC 4.A.5.1.1 / P69831 PTKC aka GATC aka B2092, component of Galactitol porter from Escherichia coli (see 6 papers)
    46% identity, 88% coverage of query (328 bits)

lmo2665 / Q8Y412 D-arabinitol/D-xylitol PTS component EIIC from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (see 5 papers)
TC 4.A.5.1.2 / Q71WA6 PTS system, galactitol-specific, IIC component, component of Pentitol [arabitol (arabinitol, lyxitol)/xylitol] PTS permease, IICBA (encoded within an operon that also encodes a polyol-P dehydrogenase, a ribose-5-P isomerase, a ribulose 5-P-3-epimerase, and a BlgG-type PTS antiterminator) (Saklani-Jusforgues et al., 2001; Kentache T et al., 2016, in press) from Listeria monocytogenes serotype 4b (strain F2365) (see paper)
    41% identity, 92% coverage of query (310 bits)

TC 4.A.5.1.4 / Q8FCM4 PTS system, galactitol-specific IIC component, component of Paralogous system of the E. coli galactitol PTS permease system, PTS-galactitol family (Pgf) from Escherichia coli O6 (see paper)
    39% identity, 98% coverage of query (306 bits)

TC 4.A.5.1.5 / D4GUQ0 PTS system, galactitol-specific enzyme II, C component, component of Galactitol enzyme II complex, IIAGat - IIBGat - IICGat (based on homology) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (see paper)
    34% identity, 88% coverage of query (217 bits)

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Build an alignment for 18328 and 4 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory