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Searching for up to 100 curated homologs for 18378 FitnessBrowser__Keio:18378 (716 a.a.)

Found high-coverage hits (≥70%) to 5 curated proteins.

Removed hits that are identical to the query, leaving 4

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

AO353_25255 large subunit of pyruvate transporter (CstA) from Pseudomonas fluorescens FW300-N2E3
    69% identity, 98% coverage of query (984 bits)

RR42_RS20515 large component of pyruvate transporter (cstA-like) from Cupriavidus basilensis FW507-4G11
    64% identity, 100% coverage of query (892 bits)

YbdC / b0598 carbon starvation protein A from Escherichia coli K-12 substr. MG1655 (see 5 papers)
cstA / P15078 pyruvate transporter CstA from Escherichia coli (strain K12) (see 6 papers)
CSTA_ECOLI / P15078 Peptide transporter CstA; Carbon starvation protein A from Escherichia coli (strain K12) (see 3 papers)
    62% identity, 99% coverage of query (871 bits)

CSTA_CAMJE / Q0P9Y2 Peptide transporter CstA; Carbon starvation protein A from Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) (see paper)
TC 2.A.114.1.5 / Q0P9Y2 CstA of 703 aas and 18 putative TMSs. In C. jejuni, this protein plays a role in starvation responses and peptide uptake.  A ΔcstA mutant has reduced use of di- and tri-peptides when used as nitrogen sources. The mutant also has reduced motility and agglutination and shows decreased host-pathogen relationships from Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168)
    52% identity, 98% coverage of query (693 bits)

Build an alignment

Build an alignment for 18378 and 4 homologs with ≥ 30% identity

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory