Sites on a Tree

 

Searching for up to 100 curated homologs for 201602 FitnessBrowser__MR1:201602 (529 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.2.6.2 / Q9A612 The maltose/maltooligosaccharide transporter, MalI (541 aas) from Caulobacter crescentus (see paper)
    59% identity, 91% coverage of query (558 bits)

CA265_RS24665 maltose transporter MalT from Pedobacter sp. GW460-11-11-14-LB5
    44% identity, 94% coverage of query (405 bits)

Build an alignment

Build an alignment for 201602 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

suc3 / CAD58887.1 sucrose transporter from Plantago major (see paper)
    22% identity, 88% coverage of query (97.1 bits)

SUC3_ARATH / O80605 Sucrose transport protein SUC3; AtSUC3; Sucrose permease 3; Sucrose transporter 2; Sucrose-proton symporter 3 from Arabidopsis thaliana (Mouse-ear cress) (see 4 papers)
TC 2.A.2.4.3 / O80605 Sucrose:H+ symporter, Suc3 or Sut3 of 464 aas. Expressed in cells adjacent to the vascular tissue and in a carpel cell layer). Km (sucrose)= 1.9 mM; maltose is a competitor from Arabidopsis thaliana (Mouse-ear cress) (see 5 papers)
SUC3 / RF|NP_178389.1 sucrose transport protein SUC3 from Arabidopsis thaliana (see paper)
    22% identity, 95% coverage of query (96.3 bits)

SUT4_ORYSJ / Q6YK44 Sucrose transport protein SUT4; Sucrose permease 4; Sucrose transporter 4; OsSUT4; Sucrose-proton symporter 4 from Oryza sativa subsp. japonica (Rice) (see paper)
    21% identity, 90% coverage of query (82.0 bits)

S45A2_MOUSE / P58355 Membrane-associated transporter protein; Melanoma antigen AIM1; Protein AIM-1; Protein underwhite; Solute carrier family 45 member 2 from Mus musculus (Mouse) (see 4 papers)
TC 2.A.2.4.14 / P58355 Melanocyte-specific antigen or melanoma antigen, MatP, Slc45a2, Aim-1, AIM1, at the mouse underwhite locus from Mus musculus
    21% identity, 93% coverage of query (67.4 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory