Sites on a Tree

 

Searching for up to 100 curated homologs for 209218 MicrobesOnline__882:209218 (579 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

ndh / BAA01545.1 NADH dehydrogenase, alpha-2 subunit from Bacillus alcalophilus (see paper)
    31% identity, 92% coverage of query (218 bits)

O66266 NADH oxidase (H2O2-forming) (EC 1.6.3.3) from Streptococcus mutans (see 3 papers)
    34% identity, 79% coverage of query (216 bits)

4ykgA Crystal structure of the alkylhydroperoxide reductase subunit f (ahpf) with NAD+ from escherichia coli
    31% identity, 78% coverage of query (178 bits)

4ykfA Crystal structure of the alkylhydroperoxide reductase subunit f (ahpf) with nadh from escherichia coli
    31% identity, 78% coverage of query (178 bits)

P35340 Alkyl hydroperoxide reductase subunit F; Alkyl hydroperoxide reductase F52A protein; EC 1.8.1.- from Escherichia coli (strain K12)
    31% identity, 78% coverage of query (178 bits)

1hyuA / P19480 Crystal structure of intact ahpf (see paper)
    30% identity, 80% coverage of query (173 bits)

Build an alignment

Build an alignment for 209218 and 6 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory