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Searching for up to 100 curated homologs for 350817 FitnessBrowser__Btheta:350817 (265 a.a.)

Found high-coverage hits (≥70%) to 14 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

G7SFQ8 ABC-type polyamine transporter (subunit 2/4) (EC 7.6.2.11) from Streptococcus suis (see paper)
    39% identity, 99% coverage of query (180 bits)

TC 3.A.1.11.7 / Q97Q44 Spermidine/putrescine ABC transporter, permease protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
    37% identity, 99% coverage of query (177 bits)

PotC / b1124 spermidine preferential ABC transporter membrane subunit PotC (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 4 papers)
PotC / P0AFK6 spermidine preferential ABC transporter membrane subunit PotC (EC 7.6.2.11) from Escherichia coli (strain K12) (see 2 papers)
POTC_ECOLI / P0AFK6 Spermidine/putrescine transport system permease protein PotC from Escherichia coli (strain K12) (see paper)
TC 3.A.1.11.1 / P0AFK6 Spermidine/putrescine transport system permease protein PotC aka B1124, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli (see 5 papers)
potC spermidine/putrescine ABC transporter, permease protein PotC from Escherichia coli K12 (see paper)
    38% identity, 84% coverage of query (148 bits)

PotI / b0857 putrescine ABC transporter membrane subunit PotI (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
PotI / P0AFL1 putrescine ABC transporter membrane subunit PotI (EC 7.6.2.11) from Escherichia coli (strain K12) (see paper)
POTI_ECOLI / P0AFL1 Putrescine transport system permease protein PotI from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.11.2 / P0AFL1 PotI aka B0857, component of Putrescine porter from Escherichia coli (see 5 papers)
    37% identity, 95% coverage of query (133 bits)

YdcV / b1443 putative ABC transporter membrane subunit YdcV from Escherichia coli K-12 substr. MG1655 (see 4 papers)
ydcV / P0AFR9 putative ABC transporter membrane subunit YdcV from Escherichia coli (strain K12) (see 4 papers)
YDCV_ECOLI / P0AFR9 Inner membrane ABC transporter permease protein YdcV from Escherichia coli (strain K12) (see 2 papers)
    31% identity, 76% coverage of query (82.4 bits)

Build an alignment

Build an alignment for 350817 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Change minimum %identity:

Additional hits (identity < 30%)

TC 3.A.1.11.6 / Q1M7Q2 Putative spermidine/putrescine transport system ABC transporter permease component, component of The γ-aminobutyrate (GABA) uptake system, GtsABCD from Rhizobium leguminosarum bv. viciae (strain 3841) (see paper)
    26% identity, 80% coverage of query (74.3 bits)

TC 3.A.1.11.3 / Q44381 MotD, component of Mannopine porter from Agrobacterium tumefaciens (see paper)
    23% identity, 98% coverage of query (64.3 bits)

TC 3.A.1.11.4 / O70071 ChtK, component of Chrysopine porter
    22% identity, 94% coverage of query (54.7 bits)

TC 3.A.1.20.2 / Q9KLQ6 Iron(III) ABC transporter, permease protein, component of Hexose-phosphate transporter from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
    22% identity, 83% coverage of query (53.5 bits)

A0A0K2E5X6 ABC-type polyamine transporter (subunit 3/4) (EC 7.6.2.11) from Streptococcus suis (see paper)
    28% identity, 98% coverage of query (53.1 bits)

CysW / b2423 sulfate/thiosulfate ABC transporter inner membrane subunit CysW (EC 7.3.2.3; EC 7.3.2.5) from Escherichia coli K-12 substr. MG1655 (see paper)
CysW / P0AEB0 sulfate/thiosulfate ABC transporter inner membrane subunit CysW (EC 7.3.2.3; EC 7.3.2.5) from Escherichia coli (strain K12) (see paper)
TC 3.A.1.6.1 / P0AEB0 Sulfate transport system permease protein CysW aka B2423, component of Sulfate/thiosulfate porter from Escherichia coli (see 5 papers)
    26% identity, 75% coverage of query (52.4 bits)

PotB / b1125 spermidine preferential ABC transporter membrane subunit PotB (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
PotB / P0AFK4 spermidine preferential ABC transporter membrane subunit PotB (EC 7.6.2.11) from Escherichia coli (strain K12) (see 2 papers)
TC 3.A.1.11.1 / P0AFK4 Spermidine/putrescine transport system permease protein PotB aka B1125, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli (see 5 papers)
potB spermidine/putrescine ABC transporter, permease protein PotB from Escherichia coli K12 (see 5 papers)
    22% identity, 77% coverage of query (51.2 bits)

Pf1N1B4_5114 sucrose ABC transporter, permease component 2 from Pseudomonas fluorescens FW300-N1B4
    23% identity, 79% coverage of query (49.7 bits)

TC 3.A.1.20.1 / O54371 BitE, component of The iron transporter, BitABCDEF from Treponema hyodysenteriae (Serpulina hyodysenteriae) (see paper)
    23% identity, 93% coverage of query (47.8 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory