Sites on a Tree

 

Searching for up to 100 curated homologs for 3606773 FitnessBrowser__Dino:3606773 (564 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

mcd / D3JV03 (2S)-methylsuccinyl-CoA dehydrogenase monomer (EC 1.3.8.12) from Cereibacter sphaeroides (see paper)
MCD_CERSP / D3JV03 (2S)-methylsuccinyl-CoA dehydrogenase; MCD; EC 1.3.8.12 from Cereibacter sphaeroides (Rhodobacter sphaeroides) (see paper)
D3JV03 (2S)-methylsuccinyl-CoA dehydrogenase (EC 1.3.8.12) from Cereibacter sphaeroides (see 2 papers)
    74% identity, 97% coverage of query (817 bits)

A1B5Y0 (2S)-methylsuccinyl-CoA dehydrogenase (EC 1.3.8.12) from Paracoccus denitrificans (see paper)
    73% identity, 95% coverage of query (780 bits)

6es9A / A1B5Y0 Methylsuccinyl-coa dehydrogenase of paracoccus denitrificans with bound flavin adenine dinucleotide (see paper)
    73% identity, 95% coverage of query (780 bits)

8ciwA / A0A1H5ILA2 Methylsuccinyl-coa dehydrogenase from pseudomonas migulae with bound fad and (2s)-methylsuccinyl-coa (see paper)
    42% identity, 74% coverage of query (290 bits)

acrC / G3KIM8 propionyl-CoA dehydrogenase from Anaerotignum propionicum (see paper)
ACRC_ANAPI / G3KIM8 Acryloyl-CoA reductase (NADH); Propionyl-CoA dehydrogenase; EC 1.3.1.95 from Anaerotignum propionicum (Clostridium propionicum) (see paper)
    35% identity, 71% coverage of query (220 bits)

Build an alignment

Build an alignment for 3606773 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

3sf6A / A0QV68 Crystal structure of glutaryl-coa dehydrogenase from mycobacterium smegmatis (see paper)
    28% identity, 70% coverage of query (136 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory