Sites on a Tree

 

Searching for up to 100 curated homologs for 3607871 FitnessBrowser__Dino:3607871 (270 a.a.)

Found high-coverage hits (≥70%) to 9 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

SMc00432 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Sinorhizobium meliloti 1021
    52% identity, 97% coverage of query (281 bits)

BWI76_RS03075 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Klebsiella michiganensis M5al
    47% identity, 96% coverage of query (240 bits)

PS417_11860 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Pseudomonas simiae WCS417
    47% identity, 92% coverage of query (239 bits)

AO356_23170 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Pseudomonas fluorescens FW300-N2C3
    47% identity, 95% coverage of query (234 bits)

Pf6N2E2_514 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Pseudomonas fluorescens FW300-N2E2
    45% identity, 95% coverage of query (230 bits)

AO353_21345 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Pseudomonas fluorescens FW300-N2E3
    45% identity, 90% coverage of query (227 bits)

iolB / P42413 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Bacillus subtilis (strain 168) (see 2 papers)
IOLB_BACSU / P42413 5-deoxy-glucuronate isomerase; 5DG isomerase; EC 5.3.1.30 from Bacillus subtilis (strain 168) (see paper)
P42413 5-deoxy-glucuronate isomerase (EC 5.3.1.30) from Bacillus subtilis (see paper)
    41% identity, 99% coverage of query (223 bits)

BPHYT_RS13925 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Burkholderia phytofirmans PsJN
    42% identity, 98% coverage of query (215 bits)

PGA1_c07230 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Phaeobacter inhibens BS107
    31% identity, 87% coverage of query (93.2 bits)

Build an alignment

Build an alignment for 3607871 and 9 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory