Sites on a Tree

 

Searching for up to 100 curated homologs for 3608427 FitnessBrowser__Dino:3608427 (587 a.a.)

Found high-coverage hits (≥70%) to 49 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

GGAP_SPITZ / G0GBS4 Glucosylglycerate phosphorylase; GGa phosphorylase; GGaP; EC 2.4.1.352 from Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203) (see paper)
    44% identity, 91% coverage of query (448 bits)

GGAP_ALLS1 / D7BAR0 Glucosylglycerate phosphorylase; GGa phosphorylase; GGaP; EC 2.4.1.352 from Allomeiothermus silvanus (strain ATCC 700542 / DSM 9946 / NBRC 106475 / NCIMB 13440 / VI-R2) (Thermus silvanus) (see paper)
D7BAR0 glucosylglycerate phosphorylase (EC 2.4.1.352) from Meiothermus silvanus (see paper)
    45% identity, 89% coverage of query (426 bits)

GgaP / b1309 glucosylglycerate phosphorylase (EC 2.4.1.352) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
ycjM / P76041 glucosylglycerate phosphorylase (EC 2.4.1.352) from Escherichia coli (strain K12) (see 4 papers)
GGAP_ECOLI / P76041 Glucosylglycerate phosphorylase; GGa phosphorylase; GGaP; EC 2.4.1.352 from Escherichia coli (strain K12) (see 2 papers)
P76041 glucosylglycerate phosphorylase (EC 2.4.1.352) from Escherichia coli (see paper)
AAC74391.2 sucrose phosphorylase (YcjM) (EC 2.4.1.7) (see protein)
    38% identity, 92% coverage of query (379 bits)

Build an alignment

Build an alignment for 3608427 and 3 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

AAO21868.1 sucrose phosphorylase (LaSP;GtfA2;LBA1437) (EC 2.4.1.7) (see protein)
    28% identity, 83% coverage of query (191 bits)

ABS59292.1 sucrose phosphorylase (742sp) (EC 2.4.1.7) (see protein)
    29% identity, 74% coverage of query (174 bits)

CAA30846.1 sucrose phosphorylase (GftA;SmSP) (EC 2.4.1.7) (see protein)
    28% identity, 74% coverage of query (171 bits)

B1XIU7 amylosucrase (EC 2.4.1.4) from Synechococcus sp. (see paper)
ACA98889.1 amylosucrase (AmsA;1986-orf;AMS;SYNPCC7002_A0885) (EC 2.4.1.4) (see protein)
    27% identity, 87% coverage of query (169 bits)

AAD40317.1 sucrose phosphorylase (EC 2.4.1.7) (see protein)
    31% identity, 74% coverage of query (167 bits)

SUCP_STRMU / P10249 Sucrose phosphorylase; Glucosyltransferase-A; GTF-A; Sucrose glucosyltransferase; EC 2.4.1.7 from Streptococcus mutans serotype c (strain ATCC 700610 / UA159) (see paper)
AAN58596.1 sucrose phosphorylase (GtfA;SMU.881) (EC 2.4.1.7) (see protein)
gtfA sucrose phosphorylase; EC 2.4.1.7 from Streptococcus mutans (see 4 papers)
    28% identity, 74% coverage of query (164 bits)

CAA80424.1 sucrose phosphorylase (EC 2.4.1.7) (see protein)
    30% identity, 74% coverage of query (164 bits)

2207198A sucrose phosphorylase (EC 2.4.1.7) (see protein)
    28% identity, 73% coverage of query (159 bits)

Q1GY12 amylosucrase (EC 2.4.1.4) from Methylobacillus flagellatus (see 2 papers)
ABE50875.1 amylosucrase (MFAS;Mfla_2611) (EC 2.4.1.4) (see protein)
    25% identity, 87% coverage of query (159 bits)

Q59495 sucrose phosphorylase (EC 2.4.1.7) from Leuconostoc mesenteroides (see paper)
BAA14344.1 sucrose phosphorylase (LmSPase) (EC 2.4.1.7) (see protein)
    28% identity, 73% coverage of query (159 bits)

scrP / GI|22550283 sucrose phosphorylase; EC 2.4.1.7 from Bifidobacterium animalis subsp. lactis (see paper)
    29% identity, 74% coverage of query (159 bits)

B8Y3Y0 sucrose phosphorylase (EC 2.4.1.7) from uncultured bacterium (see paper)
    30% identity, 76% coverage of query (157 bits)

AAM38333.1 sucrose hydrolase (XAC3490) (EC 3.2.1.-) (see protein)
    29% identity, 87% coverage of query (155 bits)

M9ZS93 sucrose phosphorylase (EC 2.4.1.7) from Limosilactobacillus reuteri (see paper)
AGK37834.1 sucrose phosphorylase (ScrP) (EC 2.4.1.7) (see protein)
    26% identity, 75% coverage of query (155 bits)

spp / D9TT09 sucrose 6F-phosphate phosphorylase (EC 2.4.1.329) from Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIMB 9385 / NCA 3814 / NCTC 13789 / WDCM 00135 / 2032) (see paper)
SUCPP_THETC / D9TT09 Sucrose 6(F)-phosphate phosphorylase; Sucrose 6'-phosphate phosphorylase; SPP; EC 2.4.1.329 from Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIMB 9385 / NCA 3814 / NCTC 13789 / WDCM 00135 / 2032) (Clostridium thermosaccharolyticum) (see 3 papers)
D9TT09 sucrose 6F-phosphate phosphorylase (EC 2.4.1.329) from Thermoanaerobacterium thermosaccharolyticum (see paper)
ADL69407.1 6?-P-sucrose phosphorylase (SPP;TtSPP;Tthe_1921) (EC 2.4.1.-) (see protein)
    28% identity, 74% coverage of query (154 bits)

Q6UVM5 sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis (see 2 papers)
AAQ93678.1 sucrose hydrolase (Suh) (EC 3.2.1.-) (see protein)
    28% identity, 87% coverage of query (154 bits)

AAX33736.1 sucrose phosphorylase (LmSP1) (EC 2.4.1.7) (see protein)
    27% identity, 74% coverage of query (154 bits)

A0A4P8XUU6 amylosucrase (EC 2.4.1.4) from Deinococcus radiopugnans (see paper)
    27% identity, 84% coverage of query (152 bits)

ams / G4T024 sucrose β-fructofuranosidase (EC 3.2.1.26; EC 2.4.1.4) from Methylotuvimicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) (see 4 papers)
G4T024 amylosucrase (EC 2.4.1.4) from Methylotuvimicrobium alcaliphilum (see 3 papers)
    25% identity, 83% coverage of query (152 bits)

3czkA / Q6UVM5 Crystal structure analysis of sucrose hydrolase(suh) e322q-sucrose complex (see paper)
    28% identity, 87% coverage of query (149 bits)

AAN24362.1 sucrose phosphorylase (Spl;BL0536) (EC 2.4.1.7) (see protein)
    27% identity, 76% coverage of query (148 bits)

A5A8M5 sucrose phosphorylase (EC 2.4.1.7) from Bifidobacterium longum (see paper)
BAF62433.1 sucrose phosphorylase (Spl) (EC 2.4.1.7) (see protein)
    27% identity, 76% coverage of query (148 bits)

7znpA / A0A1J0SGS2 Structure of amedsp
    28% identity, 74% coverage of query (147 bits)

scrP / Q84BY1 sucrose phosphorylase (EC 2.4.1.7) from Bifidobacterium longum (see paper)
AAO84039.1 sucrose phosphorylase (SplP) (EC 2.4.1.7) (see protein)
    27% identity, 76% coverage of query (147 bits)

B6F2H1 amylosucrase (EC 2.4.1.4) from Alteromonas macleodii (see 2 papers)
BAG82876.1 amylosucrase (Amas) (EC 2.4.1.4) (see protein)
    24% identity, 97% coverage of query (143 bits)

3uerA / Q1J0W0 Crystal structure of amylosucrase from deinococcus geothermalis in complex with turanose (see paper)
    25% identity, 87% coverage of query (142 bits)

7xdqA / E4PMA5 Crystal structure of a glucosylglycerol phosphorylase mutant from marinobacter adhaerens
    30% identity, 74% coverage of query (142 bits)

Q1J0W0 amylosucrase (EC 2.4.1.4) from Deinococcus geothermalis (see 10 papers)
ABF44874.1 amylosucrase (DgAS;Dgeo_0572) (EC 2.4.1.4) (see protein)
    25% identity, 87% coverage of query (142 bits)

A0A0H2X5U3 amylosucrase (EC 2.4.1.4) from Xanthomonas campestris pv. campestris (see paper)
AAM42629.1 sucrose hydrolase (SuxB;XCC3359) (EC 3.2.1.-) (see protein)
    27% identity, 87% coverage of query (139 bits)

gtfA / E4PMA5 glucosylglycerol phosphorylase (configuration-retaining) (EC 2.4.1.359) from Marinobacter adhaerens (strain DSM 23420 / HP15) (see paper)
GGOP_MARAH / E4PMA5 Glucosylglycerol phosphorylase; GGoP; 2-O-alpha-D-glucopyranosylglycerol:phosphate alpha-D-glucosyltransferase; 2-O-alpha-D-glucosylglycerol phosphorylase (retaining); EC 2.4.1.359 from Marinobacter adhaerens (strain DSM 23420 / HP15) (see paper)
E4PMA5 glucosylglycerol phosphorylase (configuration-retaining) (EC 2.4.1.359) from Marinobacter adhaerens (see paper)
    29% identity, 74% coverage of query (139 bits)

A0A1Y3Q6Q6 sucrose phosphorylase (EC 2.4.1.7) from Thermobacillus sp. ZCTH02-B1 (see paper)
    28% identity, 75% coverage of query (139 bits)

B6F2G7 amylosucrase (EC 2.4.1.4) from Alteromonas stellipolaris (see paper)
    24% identity, 84% coverage of query (135 bits)

A0A0A0BUC7 amylosucrase (EC 2.4.1.4) from Cellulomonas carbonis (see 3 papers)
    26% identity, 87% coverage of query (133 bits)

SUCP_BIFAA / A0ZZH6 Sucrose phosphorylase; SP; SPase; EC 2.4.1.7 from Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) (see 3 papers)
AAO33821.1 sucrose phosphorylase (SucP;SP;BaSP) (EC 2.4.1.7) (see protein)
    27% identity, 78% coverage of query (129 bits)

5c8bB / A0ZZH6 Structural insights into the redesign of a sucrose phosphorylase by induced loop repositioning (see paper)
    27% identity, 78% coverage of query (127 bits)

2gduA E232q mutant of sucrose phosphorylase from bifidobacterium adolescentis in complex with sucrose
    27% identity, 78% coverage of query (127 bits)

5m9xB Structure of sucrose phosphorylase from bifidobacterium adolescentis bound to glycosylated resveratrol
    27% identity, 78% coverage of query (125 bits)

G4T4R6 sucrose 6F-phosphate phosphorylase (EC 2.4.1.329) from [Ruminococcus] gnavus (see paper)
    27% identity, 72% coverage of query (123 bits)

AMYS_NEIPO / Q9ZEU2 Amylosucrase; EC 2.4.1.4 from Neisseria polysaccharea (see 7 papers)
Q9ZEU2 amylosucrase (EC 2.4.1.4) from Neisseria polysaccharea (see 19 papers)
AAT15258.1 amylosucrase (Ams;NpAS) (EC 2.4.1.4) (see protein)
    25% identity, 82% coverage of query (122 bits)

3ueqA / Q9ZEU2 Crystal structure of amylosucrase from neisseria polysaccharea in complex with turanose (see paper)
    25% identity, 82% coverage of query (120 bits)

D7CVD0 amylosucrase (EC 2.4.1.4) from Truepera radiovictrix (see paper)
    25% identity, 89% coverage of query (119 bits)

1s46A Covalent intermediate of the e328q amylosucrase mutant
    25% identity, 82% coverage of query (118 bits)

B8H6N5 amylosucrase (EC 2.4.1.4) from Pseudarthrobacter chlorophenolicus (see 2 papers)
ACL41561.1 amylosucrase (AcAS;Achl_3605) (EC 2.4.1.4) (see protein)
    26% identity, 73% coverage of query (117 bits)

1jgiA Crystal structure of the active site mutant glu328gln of amylosucrase from neisseria polysaccharea in complex with the natural substrate sucrose
    25% identity, 82% coverage of query (117 bits)

Q9RVT9 amylosucrase (EC 2.4.1.4) from Deinococcus radiodurans (see 2 papers)
AAF10510.1 amylosucrase (AS;DrAS;DR0933) (EC 2.4.1.4) (see protein)
    25% identity, 81% coverage of query (116 bits)

4m56A The structure of wild-type mall from bacillus subtilis
    22% identity, 83% coverage of query (58.9 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory