Sites on a Tree

 

Searching for up to 100 curated homologs for 3609740 FitnessBrowser__Dino:3609740 (326 a.a.)

Found high-coverage hits (≥70%) to 12 curated proteins.

Removed hits that are identical to the query, leaving 11

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.80.1.4 / S5XTE7 Citrate uptake transporter, substrate binding protein, component of Pmf-dependent citrate uptake porter, TctABC from Corynebacterium glutamicum MB001
    34% identity, 91% coverage of query (174 bits)

HP15_2661 Citrate uptake transporter, substrate-binding component TctC from Marinobacter adhaerens HP15
    34% identity, 90% coverage of query (164 bits)

Build an alignment

Build an alignment for 3609740 and 2 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

TC 2.A.80.1.1 / Q9FA46 TctC aka STM2786, component of The tricarboxylate transporter, TctABC from Salmonella enterica (see paper)
    24% identity, 98% coverage of query (100 bits)

8hkbA / A0A0K8P8D2 Tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d (see paper)
    27% identity, 81% coverage of query (84.7 bits)

tphCII / BAE47084.1 periplasmic terephthalate binding receptor from Comamonas sp. E6 (see paper)
    29% identity, 74% coverage of query (67.0 bits)

TC 2.A.80.1.2 / Q5D0X7 Terephthalate permease, component of Terephthalate (TPA) aromatic acid uptake transport system, TpiBA/TphC from Comamonas testosteroni
    28% identity, 74% coverage of query (63.9 bits)

2f5xB / Q7VTS1 Structure of periplasmic binding protein bugd (see paper)
    24% identity, 90% coverage of query (62.4 bits)

iphC / BAH70270.1 periplasmic isophthalate binding receptor from Comamonas sp. E6 (see 2 papers)
    21% identity, 78% coverage of query (61.6 bits)

5oeiA / Q6N193 R. Palustris rpa4515 with oxoadipate (see paper)
    23% identity, 90% coverage of query (47.0 bits)

5okuA R. Palustris rpa4515 with adipate
    23% identity, 90% coverage of query (47.0 bits)

6hkeB / Q6N446 Matc (rpa3494) from rhodopseudomonas palustris with bound malate (see paper)
    26% identity, 77% coverage of query (45.4 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory