Sites on a Tree

 

Searching for up to 100 curated homologs for 3610174 FitnessBrowser__Dino:3610174 (85 a.a.)

Found high-coverage hits (≥70%) to 4 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Psest_0346 small component of pyruvate/D-alanine transporter (TIGR03647) from Pseudomonas stutzeri RCH2
    75% identity, 100% coverage of query (141 bits)

HP15_1252 small component of pyruvate transporter (TIGR03647) from Marinobacter adhaerens HP15
    73% identity, 94% coverage of query (128 bits)

Sama_1522 small component of lactate uptake system from Shewanella amazonensis SB2B
    51% identity, 96% coverage of query (87.8 bits)

Shew_2372 small component of L-lactate and L-malate uptake system from Shewanella loihica PV-4
    47% identity, 98% coverage of query (81.3 bits)

Build an alignment

Build an alignment for 3610174 and 4 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory