Sites on a Tree


Searching for up to 100 curated homologs for 5207980 Shew_0496 amino acid carrier protein (RefSeq) (457 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

TC 2.A.25.1.9 / W0WFC6 Probable Glycine/alanine/asparagine/glutamine uptake porter, AgcS from Pseudomonas aeruginosa MH38
    52% identity, 96% coverage of query (402 bits)

AGCS_METMP / Q6LX42 Sodium/alanine symporter AgcS; Alanine permease; Alanine/glycine:cation symporter from Methanococcus maripaludis (strain S2 / LL) (see 2 papers)
TC 2.A.25.1.3 / Q6LX42 Alanine:Na+ symporter, AgcS from Methanococcus maripaludis (see paper)
    50% identity, 99% coverage of query (392 bits)

6cseM / Q6LX42 Crystal structure of sodium/alanine symporter agcs with l-alanine bound (see paper)
    51% identity, 95% coverage of query (387 bits)

6csfM Crystal structure of sodium/alanine symporter agcs with d-alanine bound
    51% identity, 95% coverage of query (387 bits)

YaaJ / b0007 putative transporter YaaJ from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    36% identity, 97% coverage of query (240 bits)

GLNT_BACSU / O31464 Probable sodium/glutamine symporter GlnT from Bacillus subtilis (strain 168) (see paper)
    37% identity, 95% coverage of query (237 bits)

TC 2.A.25.1.5 / Q45068 Amino-acid carrier protein, AlsT from Bacillus subtilis (strain 168) (see 4 papers)
    34% identity, 98% coverage of query (233 bits)

ALCP_BACP3 / P30145 Sodium/proton-dependent alanine carrier protein from Bacillus sp. (strain PS3) (see paper)
TC 2.A.25.1.2 / P30145 Alanine:Na+ (or H+) symporter (see paper)
    33% identity, 90% coverage of query (176 bits)

Build an alignment

Build an alignment for 5207980 and 8 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory