Searching for up to 100 curated homologs for 58 a.a. (RPRTTITAKQ...) (58 a.a.)
Found high-coverage hits (≥70%) to 100 curated proteins.
Removed hits that are identical to the query, leaving 98
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
LHX3_XENLA / P36200 LIM/homeobox protein Lhx3; LIM homeobox protein 3; Homeobox protein LIM-3; xLIM-3 from Xenopus laevis (African clawed frog) (see paper)
98% identity, 100% coverage of query (114 bits)
LHX3_CHICK / P53412 LIM/homeobox protein Lhx3; LIM homeobox protein 3; Homeobox protein LIM-3 from Gallus gallus (Chicken) (see paper)
98% identity, 100% coverage of query (114 bits)
LHX3_PIG / O97581 LIM/homeobox protein Lhx3; LIM homeobox protein 3; Homeobox protein LIM-3; Homeobox protein P-LIM from Sus scrofa (Pig) (see paper)
95% identity, 100% coverage of query (111 bits)
LHX3_HALRO / Q25132 LIM/homeobox protein Lhx3; Hr-Lhx3; LIM homeobox protein 3; LIM/homeobox protein LIM; HrLIM from Halocynthia roretzi (Sea squirt) (Cynthia roretzi) (see 2 papers)
93% identity, 100% coverage of query (111 bits)
LHX3_MOUSE / P50481 LIM/homeobox protein Lhx3; LIM homeobox protein 3; Homeobox protein LIM-3; Homeobox protein P-LIM from Mus musculus (Mouse) (see 7 papers)
95% identity, 100% coverage of query (111 bits)
LHX3_HUMAN / Q9UBR4 LIM/homeobox protein Lhx3; LIM homeobox protein 3 from Homo sapiens (Human) (see 5 papers)
95% identity, 100% coverage of query (111 bits)
HM14_CAEEL / P20271 LIM/homeobox protein ceh-14; Homeobox protein ceh-14 from Caenorhabditis elegans (see 6 papers)
88% identity, 100% coverage of query (103 bits)
LHX1_DANRE / Q90476 LIM/homeobox protein Lhx1; LIM homeobox protein 1; Homeobox protein Lim-1 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
74% identity, 98% coverage of query (95.9 bits)
LIN11_CAEEL / P20154 Protein lin-11; Abnormal cell lineage protein 11 from Caenorhabditis elegans (see 4 papers)
75% identity, 98% coverage of query (95.5 bits)
LHX1_MOUSE / P63006 LIM/homeobox protein Lhx1; LIM homeobox protein 1; Homeobox protein Lim-1 from Mus musculus (Mouse) (see 5 papers)
LHX1_RAT / P63007 LIM/homeobox protein Lhx1; LIM homeobox protein 1; Homeobox protein Lim-1; Rlim from Rattus norvegicus (Rat) (see 2 papers)
74% identity, 98% coverage of query (95.1 bits)
LHX1_HUMAN / P48742 LIM/homeobox protein Lhx1; LIM homeobox protein 1; Homeobox protein Lim-1; hLim-1 from Homo sapiens (Human) (see paper)
74% identity, 98% coverage of query (94.7 bits)
LHX1_CHICK / P53411 LIM/homeobox protein Lhx1; LIM homeobox protein 1; Homeobox protein Lim-1 from Gallus gallus (Chicken) (see paper)
74% identity, 98% coverage of query (94.4 bits)
LHX1_XENLA / P29674 LIM/homeobox protein Lhx1; LIM homeobox protein 1; Homeobox protein Lim-1; Xlim1; x-Lhx1; xLIM-1 from Xenopus laevis (African clawed frog) (see 23 papers)
74% identity, 98% coverage of query (94.4 bits)
LHX5_XENLA / P37137 LIM/homeobox protein Lhx5; LIM homeobox protein 5; Homeobox protein LIM-5; xLIM-5; xLIM-2A from Xenopus laevis (African clawed frog) (see paper)
74% identity, 98% coverage of query (91.3 bits)
MEC3_CAEEL / P09088 Mechanosensory protein 3 from Caenorhabditis elegans (see 5 papers)
61% identity, 98% coverage of query (84.3 bits)
LIM6_CAEEL / Q21192 LIM/homeobox protein lim-6 from Caenorhabditis elegans (see 6 papers)
61% identity, 98% coverage of query (75.1 bits)
LMX1A_HUMAN / Q8TE12 LIM homeobox transcription factor 1-alpha; LIM/homeobox protein 1.1; LMX-1.1; LIM/homeobox protein LMX1A from Homo sapiens (Human) (see 2 papers)
58% identity, 98% coverage of query (72.0 bits)
LMX1B_HUMAN / O60663 LIM homeobox transcription factor 1-beta; LIM/homeobox protein 1.2; LMX-1.2; LIM/homeobox protein LMX1B from Homo sapiens (Human) (see 12 papers)
58% identity, 98% coverage of query (70.5 bits)
8ik5C / Q8TE12 Transcription factor lmx1a homeobox domain in complex with wnt1 promoter
58% identity, 98% coverage of query (70.1 bits)
LMX1B_XENLA / Q8UVR3 LIM homeobox transcription factor 1-beta.1; LIM homeobox protein 1b; Xlmx1b from Xenopus laevis (African clawed frog) (see 3 papers)
58% identity, 98% coverage of query (68.6 bits)
HESXB_XENLA / Q91898 Homeobox expressed in ES cells 1-B; Homeobox protein ANF-1; XANF-1; Xanf1 from Xenopus laevis (African clawed frog) (see 9 papers)
50% identity, 97% coverage of query (60.5 bits)
ISL2A_DANRE / P53406 Insulin gene enhancer protein isl-2a; Islet-2A; Insulin gene enhancer protein isl-2; Islet-2 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
48% identity, 97% coverage of query (60.5 bits)
ISL2B_DANRE / P53407 Insulin gene enhancer protein isl-2b; Islet-2B; Insulin gene enhancer protein isl-3; Islet-3 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
48% identity, 97% coverage of query (60.5 bits)
HESXA_XENLA / Q91617 Homeobox expressed in ES cells 1-A; Homeobox protein ANF-2; xANF-2 from Xenopus laevis (African clawed frog) (see paper)
50% identity, 97% coverage of query (60.5 bits)
ISL1_DANRE / P53405 Insulin gene enhancer protein isl-1; Islet-1 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
48% identity, 97% coverage of query (60.1 bits)
ISL1_CHICK / P50211 Insulin gene enhancer protein ISL-1; Islet-1 from Gallus gallus (Chicken) (see paper)
48% identity, 97% coverage of query (60.1 bits)
ISL1_HUMAN / P61371 Insulin gene enhancer protein ISL-1; Islet-1 from Homo sapiens (Human) (see 2 papers)
ISL1_MOUSE / P61372 Insulin gene enhancer protein ISL-1; Islet-1 from Mus musculus (Mouse) (see 7 papers)
ISL1_MESAU / P61373 Insulin gene enhancer protein ISL-1; Islet-1 from Mesocricetus auratus (Golden hamster) (see paper)
ISL1_RAT / P61374 Insulin gene enhancer protein ISL-1; Islet-1 from Rattus norvegicus (Rat) (see 2 papers)
48% identity, 97% coverage of query (60.1 bits)
ISL2_MOUSE / Q9CXV0 Insulin gene enhancer protein ISL-2; Islet-2 from Mus musculus (Mouse) (see paper)
48% identity, 97% coverage of query (59.7 bits)
ZFHX3_MOUSE / Q61329 Zinc finger homeobox protein 3; AT motif-binding factor 1; AT-binding transcription factor 1; Alpha-fetoprotein enhancer-binding protein; Zinc finger homeodomain protein 3; ZFH-3 from Mus musculus (Mouse) (see 5 papers)
50% identity, 93% coverage of query (55.8 bits)
ZFHX3_HUMAN / Q15911 Zinc finger homeobox protein 3; AT motif-binding factor 1; AT-binding transcription factor 1; Alpha-fetoprotein enhancer-binding protein; Zinc finger homeodomain protein 3; ZFH-3 from Homo sapiens (Human) (see 14 papers)
50% identity, 93% coverage of query (55.8 bits)
ZFHX2_HUMAN / Q9C0A1 Zinc finger homeobox protein 2; Zinc finger homeodomain protein 2; ZFH-2 from Homo sapiens (Human) (see paper)
50% identity, 97% coverage of query (55.5 bits)
ZFHX4_MOUSE / Q9JJN2 Zinc finger homeobox protein 4; Zinc finger homeodomain protein 4; ZFH-4 from Mus musculus (Mouse) (see 2 papers)
50% identity, 97% coverage of query (55.5 bits)
ZFHX4_HUMAN / Q86UP3 Zinc finger homeobox protein 4; Zinc finger homeodomain protein 4; ZFH-4 from Homo sapiens (Human) (see paper)
50% identity, 97% coverage of query (55.5 bits)
ZFHX2_MOUSE / Q2MHN3 Zinc finger homeobox protein 2; Zinc finger homeodomain protein 5 from Mus musculus (Mouse) (see 3 papers)
50% identity, 97% coverage of query (55.5 bits)
HESX1_HUMAN / Q9UBX0 Homeobox expressed in ES cells 1; Homeobox protein ANF; hAnf from Homo sapiens (Human) (see 6 papers)
45% identity, 97% coverage of query (55.1 bits)
P28167 Zinc finger protein 2; Zinc finger homeodomain protein 2 from Drosophila melanogaster (Fruit fly)
48% identity, 97% coverage of query (55.1 bits)
HESX1_MOUSE / Q61658 Homeobox expressed in ES cells 1; Anterior-restricted homeobox protein; Homeobox protein ANF; Rathke pouch homeo box from Mus musculus (Mouse) (see 2 papers)
45% identity, 97% coverage of query (54.3 bits)
GSBN_DROME / P09083 Protein gooseberry-neuro; BSH4; Protein gooseberry proximal from Drosophila melanogaster (Fruit fly) (see paper)
45% identity, 97% coverage of query (53.5 bits)
ALX1_DANRE / Q1LVQ7 ALX homeobox protein 1; Cartilage homeoprotein 1; CART-1 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
53% identity, 91% coverage of query (52.8 bits)
ALX4_MOUSE / O35137 Homeobox protein aristaless-like 4; ALX-4 from Mus musculus (Mouse) (see paper)
48% identity, 97% coverage of query (52.8 bits)
8osbE / Q9H161 Twist1-tcf4-alx4 complex on specific DNA (see paper)
51% identity, 91% coverage of query (52.8 bits)
DUXA_HUMAN / A6NLW8 Double homeobox protein A from Homo sapiens (Human) (see paper)
47% identity, 91% coverage of query (52.8 bits)
MIXL1_CHICK / O73592 Homeobox protein MIXL1; Homeodomain protein MIX; cMIX; MIX1 homeobox-like protein 1; Mix.1 homeobox-like protein from Gallus gallus (Chicken) (see 2 papers)
46% identity, 93% coverage of query (52.8 bits)
AWH_DROME / Q8IRC7 LIM/homeobox protein Awh; Protein arrowhead from Drosophila melanogaster (Fruit fly) (see paper)
45% identity, 97% coverage of query (52.4 bits)
PAX3H_CAEEL / G5ED66 Paired box protein 3 homolog from Caenorhabditis elegans (see paper)
43% identity, 97% coverage of query (52.4 bits)
ZAG1_CAEEL / G5EBU4 Zinc finger E-box-binding homeobox protein zag-1; Zinc finger involved in axon guidance 1; ZAG-1 from Caenorhabditis elegans (see 4 papers)
41% identity, 97% coverage of query (52.4 bits)
UNC42_CAEEL / L8E946 Homeobox protein unc-42; Uncoordinated protein 42 from Caenorhabditis elegans (see 5 papers)
48% identity, 97% coverage of query (52.4 bits)
3a01F / Q06453 Crystal structure of aristaless and clawless homeodomains bound to dna (see paper)
49% identity, 91% coverage of query (52.0 bits)
LIM7_CAEEL / G5EC36 LIM/homeobox protein lim-7 from Caenorhabditis elegans (see 2 papers)
41% identity, 97% coverage of query (52.0 bits)
ALX1_GEOFO / P0DMV5 ALX homeobox protein 1; Cartilage homeoprotein 1; CART-1 from Geospiza fortis (Medium ground-finch) (see paper)
53% identity, 91% coverage of query (52.0 bits)
ALX1_HUMAN / Q15699 ALX homeobox protein 1; Cartilage homeoprotein 1; CART-1 from Homo sapiens (Human) (see 4 papers)
53% identity, 91% coverage of query (52.0 bits)
ALX1_MOUSE / Q8C8B0 ALX homeobox protein 1; Cartilage homeoprotein 1; CART-1 from Mus musculus (Mouse) (see 2 papers)
53% identity, 91% coverage of query (52.0 bits)
ALX1_RAT / Q63087 ALX homeobox protein 1; Cartilage homeoprotein 1; CART-1 from Rattus norvegicus (Rat) (see 4 papers)
53% identity, 91% coverage of query (52.0 bits)
P97458 Homeobox protein prophet of Pit-1; PROP-1; Pituitary-specific homeodomain factor from Mus musculus (Mouse)
46% identity, 97% coverage of query (51.6 bits)
MIXL1_HUMAN / Q9H2W2 Homeobox protein MIXL1; Homeodomain protein MIX; hMix; MIX1 homeobox-like protein 1; Mix.1 homeobox-like protein from Homo sapiens (Human) (see 4 papers)
45% identity, 97% coverage of query (51.2 bits)
1fjlA / P06601 Homeodomain from the drosophila paired protein bound to a DNA oligonucleotide (see paper)
45% identity, 91% coverage of query (51.2 bits)
PROP1_HUMAN / O75360 Homeobox protein prophet of Pit-1; PROP-1; Pituitary-specific homeodomain factor from Homo sapiens (Human) (see 7 papers)
46% identity, 97% coverage of query (51.2 bits)
LHX6_MOUSE / Q9R1R0 LIM/homeobox protein Lhx6; LIM homeobox protein 6; LIM/homeobox protein Lhx6.1 from Mus musculus (Mouse) (see 8 papers)
41% identity, 97% coverage of query (50.8 bits)
ALX4_HUMAN / Q9H161 Homeobox protein aristaless-like 4 from Homo sapiens (Human) (see 4 papers)
51% identity, 91% coverage of query (50.8 bits)
ALX3_HUMAN / O95076 Homeobox protein aristaless-like 3; Proline-rich transcription factor ALX3 from Homo sapiens (Human) (see paper)
46% identity, 97% coverage of query (50.1 bits)
VSX1_MOUSE / Q91V10 Visual system homeobox 1; Homeodomain protein RINX; Retinal inner nuclear layer homeobox protein; Transcription factor VSX1 from Mus musculus (Mouse) (see 2 papers)
49% identity, 88% coverage of query (50.1 bits)
MIXL1_MOUSE / Q9WUI0 Homeobox protein MIXL1; Homeodomain protein MIX; mMix; MIX1 homeobox-like protein 1; Mix.1 homeobox-like protein from Mus musculus (Mouse) (see 11 papers)
43% identity, 97% coverage of query (50.1 bits)
TRF2_PYRO7 / G4N2B2 Pyriculol/pyriculariol biosynthesis cluster transcription factor 1 from Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (Rice blast fungus) (Magnaporthe oryzae) (see paper)
45% identity, 84% coverage of query (49.7 bits)
LIM4_CAEEL / G5EEA1 LIM/homeobox protein lim-4 from Caenorhabditis elegans (see 5 papers)
43% identity, 97% coverage of query (49.7 bits)
3cmyA / P23760 Structure of a homeodomain in complex with DNA (see paper)
47% identity, 91% coverage of query (49.7 bits)
VSX1_HUMAN / Q9NZR4 Visual system homeobox 1; Homeodomain protein RINX; Retinal inner nuclear layer homeobox protein; Transcription factor VSX1 from Homo sapiens (Human) (see 10 papers)
46% identity, 97% coverage of query (49.3 bits)
AL_DROME / Q06453 Homeobox protein aristaless from Drosophila melanogaster (Fruit fly) (see paper)
49% identity, 88% coverage of query (49.3 bits)
PAX7_MOUSE / P47239 Paired box protein Pax-7 from Mus musculus (Mouse) (see 3 papers)
49% identity, 91% coverage of query (49.3 bits)
PAX7_HUMAN / P23759 Paired box protein Pax-7; HuP1 from Homo sapiens (Human) (see 3 papers)
49% identity, 91% coverage of query (48.9 bits)
SHOX_HUMAN / O15266 Short stature homeobox protein; Pseudoautosomal homeobox-containing osteogenic protein; Short stature homeobox-containing protein from Homo sapiens (Human) (see 4 papers)
47% identity, 91% coverage of query (48.9 bits)
UNC4_RAT / P97830 Homeobox protein unc-4 homolog; Homeobox protein Uncx4.1; Paired-type homeodomain transcription factor 1 from Rattus norvegicus (Rat) (see paper)
46% identity, 97% coverage of query (48.9 bits)
HDG11_ARATH / Q9FX31 Homeobox-leucine zipper protein HDG11; HD-ZIP protein HDG11; Homeodomain GLABRA 2-like protein 11; Homeodomain transcription factor HDG11; Protein ENHANCED DROUGHT TOLERANCE 1; Protein HOMEODOMAIN GLABROUS 11 from Arabidopsis thaliana (Mouse-ear cress) (see 7 papers)
45% identity, 84% coverage of query (48.9 bits)
VSX1_CARAU / Q90277 Visual system homeobox 1; Homeobox protein VSX-1; Transcription factor VSX1 from Carassius auratus (Goldfish) (see paper)
45% identity, 97% coverage of query (48.9 bits)
RAX2_BOVIN / Q7YRX0 Retina and anterior neural fold homeobox protein 2; Q50-type retinal homeobox protein; Retina and anterior neural fold homeobox-like protein 1 from Bos taurus (Bovine) (see paper)
48% identity, 93% coverage of query (48.9 bits)
LHX2_MOUSE / Q9Z0S2 LIM/homeobox protein Lhx2; Homeobox protein LH-2; LIM homeobox protein 2 from Mus musculus (Mouse) (see 2 papers)
45% identity, 97% coverage of query (48.5 bits)
8ejoA / A0A6I8NF41 Crystal structure of the homeodomain of platypus sdux in complex with DNA (see paper)
44% identity, 93% coverage of query (48.5 bits)
UNC4_MOUSE / O08934 Homeobox protein unc-4 homolog; Homeobox protein Uncx4.1 from Mus musculus (Mouse) (see 11 papers)
46% identity, 97% coverage of query (48.5 bits)
RX_HUMAN / Q9Y2V3 Retinal homeobox protein Rx; Retina and anterior neural fold homeobox protein from Homo sapiens (Human) (see 2 papers)
48% identity, 93% coverage of query (48.5 bits)
RAX2_HUMAN / Q96IS3 Retina and anterior neural fold homeobox protein 2; Q50-type retinal homeobox protein; Retina and anterior neural fold homeobox-like protein 1 from Homo sapiens (Human) (see 2 papers)
48% identity, 93% coverage of query (48.5 bits)
VSX1_DANRE / O42250 Visual system homeobox 1; Transcription factor VSX1 from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
45% identity, 97% coverage of query (48.5 bits)
DUX1_HUMAN / O43812 Double homeobox protein 1 from Homo sapiens (Human) (see 2 papers)
TC 1.I.1.1.3 / O43812 Nuclear Pore Complex, NPC with 86 protein components from Homo sapiens
44% identity, 95% coverage of query (48.1 bits)
HM10_CAEEL / P41935 Homeobox protein ceh-10 from Caenorhabditis elegans (see 7 papers)
45% identity, 91% coverage of query (48.1 bits)
DUX5_HUMAN / Q96PT3 Double homeobox protein 5 from Homo sapiens (Human) (see paper)
44% identity, 95% coverage of query (48.1 bits)
SHOX2_MOUSE / P70390 Short stature homeobox protein 2; Homeobox protein Og12X; OG-12; Paired family homeodomain protein Prx3 from Mus musculus (Mouse) (see paper)
P70390 glutaredoxin-dependent peroxiredoxin (EC 1.11.1.25) from Mus musculus (see paper)
47% identity, 91% coverage of query (48.1 bits)
HOX29_ORYSI / A2WLR5 Homeobox-leucine zipper protein HOX29; HD-ZIP protein HOX29; Homeodomain transcription factor HOX29; OsHox29 from Oryza sativa subsp. indica (Rice) (see paper)
41% identity, 90% coverage of query (47.8 bits)
RXA_XENLA / O42201 Retinal homeobox protein Rx-A; Rx1A; Xrx1; Retina and anterior neural fold homeobox protein A from Xenopus laevis (African clawed frog) (see 2 papers)
48% identity, 97% coverage of query (47.8 bits)
ATHB8_ARATH / Q39123 Homeobox-leucine zipper protein ATHB-8; HD-ZIP protein ATHB-8; Homeodomain transcription factor ATHB-8 from Arabidopsis thaliana (Mouse-ear cress) (see 7 papers)
39% identity, 90% coverage of query (47.8 bits)
ZFH1_DROME / P28166 Zinc finger protein 1; Zinc finger homeodomain protein 1 from Drosophila melanogaster (Fruit fly) (see paper)
40% identity, 100% coverage of query (47.8 bits)
PAX6_DROME / O18381 Paired box protein Pax-6; Protein eyeless from Drosophila melanogaster (Fruit fly) (see paper)
39% identity, 97% coverage of query (47.8 bits)
RXB_XENLA / O42567 Retinal homeobox protein Rx-B; Retina and anterior neural fold homeobox protein B; Rx2A; Xrx2 from Xenopus laevis (African clawed frog) (see paper)
48% identity, 97% coverage of query (47.8 bits)
ISX_MOUSE / A1A546 Intestine-specific homeobox from Mus musculus (Mouse) (see 2 papers)
47% identity, 88% coverage of query (47.8 bits)
HOX29_ORYSJ / Q5QMZ9 Homeobox-leucine zipper protein HOX29; HD-ZIP protein HOX29; Homeodomain transcription factor HOX29; OSHB5; OsHox29 from Oryza sativa subsp. japonica (Rice) (see 2 papers)
41% identity, 90% coverage of query (47.4 bits)
GSB_DROME / P09082 Protein gooseberry; BSH9; Protein gooseberry distal from Drosophila melanogaster (Fruit fly) (see paper)
39% identity, 97% coverage of query (47.4 bits)
PAX3A_XENLA / Q645N4 Paired box protein Pax-3-A; xPax3-A; Paired-domain transcription factor Pax3-A from Xenopus laevis (African clawed frog) (see 7 papers)
47% identity, 91% coverage of query (47.0 bits)
REV_ARATH / Q9SE43 Homeobox-leucine zipper protein REVOLUTA; HD-ZIP protein REV; Homeodomain transcription factor REV; Protein AMPHIVASAL VASCULAR BUNDLE 1; Protein INTERFASCICULAR FIBERLESS 1 from Arabidopsis thaliana (Mouse-ear cress) (see 12 papers)
39% identity, 90% coverage of query (47.0 bits)
ATB14_ARATH / O04291 Homeobox-leucine zipper protein ATHB-14; HD-ZIP protein ATHB-14; Homeodomain transcription factor ATHB-14; Protein PHABULOSA from Arabidopsis thaliana (Mouse-ear cress) (see 8 papers)
39% identity, 90% coverage of query (47.0 bits)
PAX3_HUMAN / P23760 Paired box protein Pax-3; HuP2 from Homo sapiens (Human) (see 26 papers)
47% identity, 91% coverage of query (47.0 bits)
ATBH9_ARATH / O04292 Homeobox-leucine zipper protein ATHB-9; HD-ZIP protein ATHB-9; Homeodomain transcription factor ATHB-9; Protein PHAVOLUTA from Arabidopsis thaliana (Mouse-ear cress) (see 9 papers)
41% identity, 90% coverage of query (47.0 bits)
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Lawrence Berkeley National Laboratory