Sites on a Tree

 

Searching for up to 100 curated homologs for 6937151 FitnessBrowser__SB2B:6937151 (444 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

Removed hits that are identical to the query, leaving 7

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Shewana3_1728 Succinylarginine dihydrolase (EC 3.5.3.23) from Shewanella sp. ANA-3
    80% identity, 100% coverage of query (753 bits)

SO2706 Succinylarginine dihydrolase (EC 3.5.3.23) from Shewanella oneidensis MR-1
    80% identity, 100% coverage of query (752 bits)

YdjT / b1745 N-succinylarginine dihydrolase (EC 3.5.3.23) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
astB / P76216 N-succinylarginine dihydrolase (EC 3.5.3.23) from Escherichia coli (strain K12) (see 4 papers)
ASTB_ECOLI / P76216 N-succinylarginine dihydrolase; EC 3.5.3.23 from Escherichia coli (strain K12) (see 3 papers)
astB / RF|NP_416259.1 N-succinylarginine dihydrolase; EC 3.5.3.23 from Escherichia coli K12 (see 6 papers)
    57% identity, 100% coverage of query (513 bits)

1ynhB / P76216 Crystal structure of n-succinylarginine dihydrolase, astb, bound to substrate and product, an enzyme from the arginine catabolic pathway of escherichia coli (see paper)
    57% identity, 99% coverage of query (512 bits)

1yniA Crystal structure of n-succinylarginine dihydrolase, astb, bound to substrate and product, an enzyme from the arginine catabolic pathway of escherichia coli
    57% identity, 99% coverage of query (508 bits)

BWI76_RS11685 Succinylarginine dihydrolase (EC 3.5.3.23) from Klebsiella michiganensis M5al
    59% identity, 100% coverage of query (505 bits)

ASTB_SALTY / Q8ZPU9 N-succinylarginine dihydrolase; EC 3.5.3.23 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
    56% identity, 100% coverage of query (501 bits)

Build an alignment

Build an alignment for 6937151 and 7 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory