Searching for up to 100 curated homologs for 7024209 FitnessBrowser__ANA3:7024209 (340 a.a.)
Found high-coverage hits (≥70%) to 71 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
Sama_2209 alpha-ketoglutarate TRAP transporter, solute receptor component from Shewanella amazonensis SB2B
77% identity, 98% coverage of query (547 bits)
Shew_1446 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component from Shewanella loihica PV-4
DCTP_SHELP / A3QCW5 C4-dicarboxylate-binding periplasmic protein DctP from Shewanella loihica (strain ATCC BAA-1088 / PV-4) (see 2 papers)
78% identity, 96% coverage of query (543 bits)
DCTP_PSEAE / Q9HU18 C4-dicarboxylate-binding periplasmic protein DctP from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
58% identity, 96% coverage of query (385 bits)
DCTP_VIBCH / Q9KQR9 C4-dicarboxylate-binding periplasmic protein DctP from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see paper)
50% identity, 97% coverage of query (333 bits)
PGA1_c20680 TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, substrate-binding component from Phaeobacter inhibens BS107
50% identity, 89% coverage of query (301 bits)
DCTP_RHOCA / P37735 C4-dicarboxylate-binding periplasmic protein DctP from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (see 3 papers)
TC 2.A.56.1.1 / P37735 DctP, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate) from Rhodobacter capsulatus (Rhodopseudomonas capsulata) (see paper)
45% identity, 94% coverage of query (273 bits)
DCTB_BACSU / P96600 C4-dicarboxylate-binding protein DctB from Bacillus subtilis (strain 168) (see paper)
40% identity, 88% coverage of query (233 bits)
TC 2.A.56.1.9 / R4JTF7 Putative TRAP transporter solute receptor DctP, component of The possible disulfide 3,3'-dithiodipropionic acid (DTDP) tripartite transporter, DctMPQ from Advenella mimigardefordensis DPN7
30% identity, 98% coverage of query (163 bits)
7bbrA / R4JTF7 Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t (see paper)
30% identity, 90% coverage of query (157 bits)
7bcrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with galactonate
30% identity, 90% coverage of query (157 bits)
7bcpA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with gluconate
30% identity, 90% coverage of query (157 bits)
7bcoA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with d-foconate
30% identity, 90% coverage of query (157 bits)
7bcnA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with xylonic acid
30% identity, 90% coverage of query (157 bits)
AZOBR_RS15915 gluconate TRAP transporter, periplasmic solute-binding component from Azospirillum brasilense Sp245
33% identity, 87% coverage of query (143 bits)
Build an alignment for 7024209 and 14 homologs with ≥ 30% identity
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Psest_2125 D-gluconate TRAP transporter, periplasmic component from Pseudomonas stutzeri RCH2
29% identity, 87% coverage of query (142 bits)
Ac3H11_3226 gluconate TRAP transporter, periplasmic solute-binding component from Acidovorax sp. GW101-3H11
33% identity, 75% coverage of query (139 bits)
4pakA / A1WPV4 Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to (r)- pantoic acid (see paper)
29% identity, 88% coverage of query (135 bits)
4p9kA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to d- erythronate with residual density suggestive of superposition with copurified alternative ligand.
29% identity, 88% coverage of query (135 bits)
DCTP_VEREI / A1WPV4 Solute-binding protein Veis_3954 from Verminephrobacter eiseniae (strain EF01-2) (see paper)
29% identity, 88% coverage of query (134 bits)
SIAP_HAEIN / P44542 Sialic acid-binding periplasmic protein SiaP; Extracytoplasmic solute receptor protein SiaP; N-acetylneuraminic-binding protein; Neu5Ac-binding protein from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 4 papers)
TC 2.A.56.1.3 / P44542 SiaP. AKA Sialic acid-binding periplasmic protein, component of Na+-dependent (smf-driven) sialic acid (N-acetyl neuraminic acid) transporter, SiaTP (Allen et al., 2005; Severi et al., 2005; Johnston et al., 2008). SiaT is also called SiaQM from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see 4 papers)
30% identity, 93% coverage of query (134 bits)
DCTP_BURCM / Q0B2F6 Solute-binding protein Bamb_6123 from Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD) (Burkholderia cepacia (strain AMMD)) (see paper)
26% identity, 89% coverage of query (130 bits)
4n15A / Q0B2F6 Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (bam_6123), target efi-510059, with bound beta-d-glucuronate (see paper)
27% identity, 79% coverage of query (130 bits)
4n17A Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (bam_6123), target efi-510059, with bound beta-d-galacturonate
27% identity, 79% coverage of query (130 bits)
3b50A / P44542 Structure of h. Influenzae sialic acid binding protein bound to neu5ac. (see paper)
30% identity, 86% coverage of query (128 bits)
YiaO / b3579 2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein from Escherichia coli K-12 substr. MG1655 (see 3 papers)
yiaO / P37676 2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein from Escherichia coli (strain K12) (see 5 papers)
YIAO_ECOLI / P37676 2,3-diketo-L-gulonate-binding periplasmic protein YiaO; 2,3-DKG-binding protein; Extracytoplasmic solute receptor protein YiaO from Escherichia coli (strain K12) (see paper)
TC 2.A.56.1.2 / P37676 YiaO, component of The 2,3-diketo-L-gulonate (2,3-DKG) transporter, YiaMNO [2,3-KDG is a breakdown product of L-ascorbate] from Escherichia coli (see 6 papers)
28% identity, 95% coverage of query (128 bits)
2v4cA Structure of sialic acid binding protein (siap) in the presence of kdn
30% identity, 86% coverage of query (128 bits)
2cexA Structure of a sialic acid binding protein (siap) in the presence of the sialic acid acid analogue neu5ac2en
30% identity, 86% coverage of query (127 bits)
2cexB Structure of a sialic acid binding protein (siap) in the presence of the sialic acid acid analogue neu5ac2en
30% identity, 86% coverage of query (127 bits)
2wx9A Crystal structure of the sialic acid binding periplasmic protein siap
30% identity, 86% coverage of query (127 bits)
4n8yA Crystal structure of a trap periplasmic solute binding protein from bradyrhizobium sp. Btai1 b (bbta_0128), target efi-510056 (bbta_0128), complex with alpha/beta-d-galacturonate (see paper)
27% identity, 75% coverage of query (126 bits)
2xwoA Siap r147e mutant in complex with sialylamide
30% identity, 86% coverage of query (126 bits)
4pdhA / Q12CD8 Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_1871, target efi-510164) bound to d- erythronate (see paper)
29% identity, 86% coverage of query (125 bits)
4x8rA Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with bound glucuronate
28% identity, 79% coverage of query (125 bits)
4pddA / Q12HD7 Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_0088, target efi-510167) bound to d- erythronate (see paper)
28% identity, 89% coverage of query (125 bits)
4p8bA / Q0KC03 Crystal structure of a trap periplasmic solute binding protein from ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate) (see paper)
28% identity, 88% coverage of query (123 bits)
7t3eA / Q6LPV9 Structure of the sialic acid bound tripartite atp-independent periplasmic (trap) periplasmic component siap from photobacterium profundum (see paper)
32% identity, 78% coverage of query (122 bits)
SIAP_VIBCH / Q9KR64 Sialic acid-binding periplasmic protein SiaP from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see 2 papers)
TC 2.A.56.1.6 / Q9KR64 C4-dicarboxylate-binding periplasmic protein, component of The Na+-dependent sialic acid uptake porter, SiaPQM. SiaQ and SiaM form a 1:1 stoichiometric complex from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see paper)
27% identity, 81% coverage of query (120 bits)
4magA Crystal structure of the periplasmic sialic acid binding protein from vibrio cholerea (see paper)
27% identity, 81% coverage of query (120 bits)
4mnpA / Q8RDN9 Structure of the sialic acid binding protein from fusobacterium nucleatum subsp. Nucleatum atcc 25586 (see paper)
30% identity, 81% coverage of query (120 bits)
7a5qB Crystal structure of vcsiap bound to sialic acid
27% identity, 81% coverage of query (120 bits)
7a5qA Crystal structure of vcsiap bound to sialic acid
27% identity, 81% coverage of query (120 bits)
DCTP_SULSN / A3T0D1 Solute-binding protein NAS141_03721 from Sulfitobacter sp. (strain NAS-14.1) (see paper)
28% identity, 94% coverage of query (119 bits)
4nx1A / A3T0D1 Crystal structure of a trap periplasmic solute binding protein from sulfitobacter sp. Nas-14.1, target efi-510292, with bound alpha-d- taluronate (see paper)
29% identity, 81% coverage of query (117 bits)
DCTP_OLEA2 / Q312S0 Isethionate-binding periplasmic protein DctP; TRAP transporter, DctP solute-binding subunit from Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) (Desulfovibrio alaskensis) (see paper)
26% identity, 92% coverage of query (117 bits)
4ovpA Crystal structure of a trap periplasmic solute binding protein from sulfitobacter sp. Nas-14.1, target efi-510292, with bound alpha-d- manuronate
29% identity, 81% coverage of query (117 bits)
8te9B / Q312S0 Crystal structure of an isethionate bound substrate binding protein (isep) from an isethionate trap transporter
26% identity, 88% coverage of query (116 bits)
4mmpA Structure of sialic acid binding protein from pasturella multocida (see paper)
28% identity, 88% coverage of query (108 bits)
4mijA / Q128M1 Crystal structure of a trap periplasmic solute binding protein from polaromonas sp. Js666 (bpro_3107), target efi-510173, with bound alpha/beta d-galacturonate, space group p21 (see paper)
27% identity, 77% coverage of query (107 bits)
DCTP1_POLSJ / Q128M1 Solute-binding protein Bpro_3107 from Polaromonas sp. (strain JS666 / ATCC BAA-500) (see paper)
27% identity, 77% coverage of query (107 bits)
4mhfA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp. Js666 (bpro_3107), target efi-510173, with bound alpha/beta d-glucuronate, space group p21
27% identity, 77% coverage of query (107 bits)
4nq8B / A0A0H3LPK2 Crystal structure of a trap periplasmic solute binding protein from bordetella bronchispeptica (bb3421), target efi-510039, with density modeled as pantoate (see paper)
25% identity, 87% coverage of query (104 bits)
4pf8A Crystal structure of a trap periplasmic solute binding protein from sulfitobacter sp. Nas-14.1 (target efi-510299) with bound beta-d- galacturonate (see paper)
26% identity, 82% coverage of query (104 bits)
DCTP_CHRSD / Q1QUN2 Solute-binding protein Csal_2479 from Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) (see paper)
23% identity, 95% coverage of query (103 bits)
4ovtA / A6X5V3 Crystal structure of a trap periplasmic solute binding protein from ochrobacterium anthropi (oant_3902), target efi-510153, with bound l- fuconate (see paper)
31% identity, 74% coverage of query (101 bits)
4p3lA / Q1QUN2 Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_2479), target efi-510085, with bound glucuronate, spg p6122 (see paper)
24% identity, 80% coverage of query (100 bits)
4nguA / Q311Q1 Crystal structure of a trap periplasmic solute binding protein from desulfovibrio alaskensis g20 (dde_1548), target efi-510103, with bound d-ala-d-ala (see paper)
29% identity, 79% coverage of query (99.8 bits)
4xeqB Crystal structure of a trap periplasmic solute binding protein from desulfovibrio vulgaris (deval_0042, target efi-510114) bound to copurified (r)-pantoic acid
24% identity, 73% coverage of query (97.4 bits)
UEHA_RUEPO / Q5LUA7 Ectoine/5-hydroxyectoine-binding periplasmic protein UehA; Uptake of ectoine and hydroxyectoine protein A from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) (see paper)
28% identity, 81% coverage of query (95.5 bits)
3fxbA / Q5LUA7 Crystal structure of the ectoine-binding protein ueha (see paper)
28% identity, 81% coverage of query (95.1 bits)
PP_1169 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component from Pseudomonas putida KT2440
25% identity, 75% coverage of query (94.7 bits)
4nhbB / B8J100 Crystal structure of a trap periplasmic solute binding protein from desulfovibrio desulfuricans (ddes_1525), target efi-510107, with bound sn-glycerol-3-phosphate (see paper)
25% identity, 85% coverage of query (91.7 bits)
4xfeA / I3UZ52 Crystal structure of a trap periplasmic solute binding protein from pseudomonas putida f1 (pput_1203), target efi-500184, with bound d- glucuronate
26% identity, 71% coverage of query (90.5 bits)
4n8gA / Q1QZT7 Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_0660), target efi-501075, with bound d-alanine-d-alanine (see paper)
25% identity, 83% coverage of query (87.0 bits)
TEAA_HALED / E1VBK1 Ectoine-binding periplasmic protein TeaA from Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) (see 3 papers)
28% identity, 75% coverage of query (84.3 bits)
4pfbA / Q8RE65 Crystal structure of a trap periplasmic solute binding protein from fusobacterium nucleatun (fn1258, target efi-510120) with bound sn- glycerol-3-phosphate (see paper)
27% identity, 84% coverage of query (78.2 bits)
DCTP_ALBFT / Q21XD7 Solute-binding protein Rfer_1840 from Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Rhodoferax ferrireducens) (see paper)
25% identity, 85% coverage of query (77.4 bits)
7nraAAA / A3K0X1 7nraAAA (see paper)
24% identity, 81% coverage of query (67.8 bits)
7nraBBB / A3K0X1 7nraBBB (see paper)
24% identity, 81% coverage of query (67.8 bits)
TLBP_THET8 / Q5SK82 Lactate-binding periplasmic protein TTHA0766; ABC transporter, solute-binding protein; Extracytoplasmic solute receptor protein TTHA0766; TRAP transporter lactate-binding subunit P from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
23% identity, 78% coverage of query (43.1 bits)
2zzwA Crystal structure of a periplasmic substrate binding protein in complex with zinc and lactate
23% identity, 78% coverage of query (43.1 bits)
2zzvA / Q5SK82 Crystal structure of a periplasmic substrate binding protein in complex with calcium and lactate (see paper)
23% identity, 78% coverage of query (43.1 bits)
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Lawrence Berkeley National Laboratory