Sites on a Tree

 

Searching for up to 100 curated homologs for 7024383 FitnessBrowser__ANA3:7024383 (578 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Shew_2371 actP-like component of L-lactate and L-malate uptake system from Shewanella loihica PV-4
    88% identity, 100% coverage of query (1004 bits)

Sama_1523 actP-like component of lactate uptake system from Shewanella amazonensis SB2B
    87% identity, 100% coverage of query (973 bits)

Psest_0347 large component of pyruvate/D-alanine transporter (actP-like) from Pseudomonas stutzeri RCH2
    58% identity, 99% coverage of query (658 bits)

HP15_1251 large component of pyruvate transporter (actP-like) from Marinobacter adhaerens HP15
    57% identity, 99% coverage of query (625 bits)

TC 2.A.21.7.5 / D5APM1 Acetate permease ActP-2/ActP2/ActP3 from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
    30% identity, 83% coverage of query (150 bits)

Build an alignment

Build an alignment for 7024383 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

TC 2.A.21.7.4 / D5AU53 Acetate uptake permease, ActP1; also takes up tellurite from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
    29% identity, 82% coverage of query (146 bits)

TC 2.A.21.7.1 / O50471 Phenylacetate permease, Ppa from Pseudomonas putida (see paper)
    26% identity, 82% coverage of query (113 bits)

PUTP_BACSU / P94392 High-affinity proline transporter PutP from Bacillus subtilis (strain 168) (see 3 papers)
TC 2.A.21.2.4 / J7JIE8 The high affinity nutritional proline uptake porter, PutP from Bacillus subtilis QB928
    24% identity, 84% coverage of query (88.2 bits)

Psest_3078 L-proline:Na+ symporter from Pseudomonas stutzeri RCH2
    24% identity, 82% coverage of query (73.2 bits)

TC 2.A.21.2.3 / Q9I5F5 L-proline uptake porter, PutP from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
    22% identity, 83% coverage of query (72.0 bits)

Echvi_1871 transporter for D-glucose/D-galactose/D-xylose/methyl-beta-D-galactopyranoside from Echinicola vietnamensis KMM 6221, DSM 17526
    21% identity, 84% coverage of query (47.0 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory