Sites on a Tree

 

Searching for up to 100 curated homologs for 7026537 FitnessBrowser__ANA3:7026537 (252 a.a.)

Found high-coverage hits (≥70%) to 100 curated proteins.

Removed hits that are identical to the query, leaving 99

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

SO4133 Uridine phosphorylase (EC 2.4.2.3) from Shewanella oneidensis MR-1
C7EWM3 uridine phosphorylase (EC 2.4.2.3) from Shewanella oneidensis (see 4 papers)
    99% identity, 100% coverage of query (518 bits)

4r2wD / Q8E9X9 X-ray structure of uridine phosphorylase from shewanella oneidensis mr-1 in complex with uridine at 1.6 a resolution (see paper)
    99% identity, 100% coverage of query (515 bits)

4yjkA Crystal structure of c212s mutant of shewanella oneidensis mr-1 uridine phosphorylase
    97% identity, 100% coverage of query (494 bits)

4r2wF X-ray structure of uridine phosphorylase from shewanella oneidensis mr-1 in complex with uridine at 1.6 a resolution
    96% identity, 100% coverage of query (492 bits)

Sama_0412 Uridine phosphorylase (EC 2.4.2.3) from Shewanella amazonensis SB2B
    93% identity, 100% coverage of query (476 bits)

udp / CAB94934.1 uridine phosphorylase from Yersinia pseudotuberculosis (see paper)
    77% identity, 99% coverage of query (404 bits)

BWI76_RS01295 Uridine phosphorylase (EC 2.4.2.3) from Klebsiella michiganensis M5al
    77% identity, 99% coverage of query (404 bits)

Udp / b3831 uridine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli K-12 substr. MG1655 (see 82 papers)
udp / P12758 uridine phosphorylase (EC 2.4.2.2) from Escherichia coli (strain K12) (see 80 papers)
UDP_ECOLI / P12758 Uridine phosphorylase; UPase; UrdPase; EC 2.4.2.3 from Escherichia coli (strain K12) (see 3 papers)
udp uridine phosphorylase; EC 2.4.2.3 from Escherichia coli K12 (see 9 papers)
    76% identity, 99% coverage of query (403 bits)

1u1eA Structure of e. Coli uridine phosphorylase complexed to 5(phenylseleno)acyclouridine (psau)
    76% identity, 99% coverage of query (403 bits)

1u1dA Structure of e. Coli uridine phosphorylase complexed to 5- (phenylthio)acyclouridine (ptau)
    76% identity, 99% coverage of query (403 bits)

1u1cA Structure of e. Coli uridine phosphorylase complexed to 5- benzylacyclouridine (bau)
    76% identity, 99% coverage of query (403 bits)

1tgyA Structure of e. Coli uridine phosphorylase complexed with uracil and ribose 1-phosphate
    76% identity, 99% coverage of query (403 bits)

1rxcJ E. Coli uridine phosphorylase: 5-fluorouracil ribose-1-phosphate complex
    76% identity, 99% coverage of query (403 bits)

1rxcB E. Coli uridine phosphorylase: 5-fluorouracil ribose-1-phosphate complex
    76% identity, 99% coverage of query (403 bits)

P0A1F6 uridine phosphorylase (EC 2.4.2.3) from Salmonella enterica subsp. enterica serovar Typhimurium (see 2 papers)
2hn9A / P0A1F6 Crystal structure of the uridine phosphorylase from salmonella typhimurium in complex with thymine and phosphate ion at 2.12a resolution
    77% identity, 99% coverage of query (402 bits)

2hwuA Crystal structure of the uridine phosphorylase from salmonella typhimurium in complex with uridine and phosphate ion at 2.91a resolution
    77% identity, 99% coverage of query (402 bits)

6rcaA X-ray structure uridine phosphorylase from vibrio cholerae in complex with 2.2'-anhydrouridine at 1.34 a
    76% identity, 98% coverage of query (401 bits)

5efoE X-ray structure uridine phosphorylase from vibrio cholerae in complex with cytidine and cytosine at 1.63a.
    76% identity, 98% coverage of query (401 bits)

5c80A X-ray structure uridine phosphorylase from vibrio cholerae in complex with uridine at 2.24 a resolution
    76% identity, 98% coverage of query (401 bits)

Q9K4U1 uridine phosphorylase (EC 2.4.2.3) from Vibrio cholerae (see 2 papers)
5efoB / Q9K4U1 X-ray structure uridine phosphorylase from vibrio cholerae in complex with cytidine and cytosine at 1.63a.
udp / CAB94933.1 uridine phosphorylase from Vibrio cholerae (see paper)
    76% identity, 98% coverage of query (400 bits)

4k6oA X-ray structure uridine phosphorylase from vibrio cholerae in complex with 6-methyluracil at 1.17 a resolution
    76% identity, 98% coverage of query (400 bits)

1rxcA E. Coli uridine phosphorylase: 5-fluorouracil ribose-1-phosphate complex
    76% identity, 99% coverage of query (394 bits)

1rxsB E. Coli uridine phosphorylase: 2'-deoxyuridine phosphate complex
    76% identity, 99% coverage of query (394 bits)

4oglA X-ray structure uridine phosphorylase from vibrio cholerae in complex with thymine at 1.25 a resolution
    75% identity, 98% coverage of query (391 bits)

1u1gA Structure of e. Coli uridine phosphorylase complexed to 5-(m- (benzyloxy)benzyl)barbituric acid (bbba)
    75% identity, 99% coverage of query (387 bits)

3pnsB Crystal structure of uridine phosphorylase complexed with uracil from vibrio cholerae o1 biovar el tor
    75% identity, 98% coverage of query (387 bits)

3kvvA Trapping of an oxocarbenium ion intermediate in up crystals
    74% identity, 99% coverage of query (385 bits)

1u1fA Structure of e. Coli uridine phosphorylase complexed to 5-(m- (benzyloxy)benzyl)acyclouridine (bbau)
    74% identity, 99% coverage of query (385 bits)

1rxsa E. Coli uridine phosphorylase: 2'-deoxyuridine phosphate complex
    74% identity, 99% coverage of query (385 bits)

4u2kB X-ray structure uridine phosphorylase from vibrio cholerae in complex with anticancer compound at 2.13 a resolution
    74% identity, 98% coverage of query (384 bits)

1zl2B Crystal structure of the uridine phosphorylase from salmonella typhimurium in complex with 2,2'-anhydrouridine and phosphate ion at 1.85a resolution
    74% identity, 99% coverage of query (384 bits)

1y1rB Crystal structure of the uridine phosphorylase from salmonella typhimurium in complex with inhibitor and phosphate ion at 2.11a resolution
    74% identity, 99% coverage of query (384 bits)

4u2kD X-ray structure uridine phosphorylase from vibrio cholerae in complex with anticancer compound at 2.13 a resolution
    74% identity, 98% coverage of query (381 bits)

1y1qC Crystal structure of the uridine phosphorylase from salmonella typhimurium in complex with uridine-5p-monophosphate and sulfate ion at 2.35a resolution
    74% identity, 99% coverage of query (377 bits)

TK1479 / Q5JJC1 uridine phosphorylase (EC 2.4.2.2) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (see paper)
UDP_THEKO / Q5JJC1 Uridine phosphorylase; UPase; UrdPase; EC 2.4.2.3 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
    44% identity, 94% coverage of query (197 bits)

3qpbC / Q5XA29 Crystal structure of streptococcus pyogenes uridine phosphorylase reveals a subclass of the np-i superfamily (see paper)
    37% identity, 98% coverage of query (167 bits)

Q5XA29 pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Streptococcus pyogenes (see paper)
    37% identity, 98% coverage of query (167 bits)

Q9YA34 uridine phosphorylase (EC 2.4.2.3) from Aeropyrum pernix (see 2 papers)
    41% identity, 88% coverage of query (165 bits)

B9LS20 guanosine phosphorylase (EC 2.4.2.15) from Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) (see paper)
    37% identity, 92% coverage of query (162 bits)

4mchA / Q5E046 Crystal structure of uridine phosphorylase from vibrio fischeri es114 complexed with 6-hydroxy-1-naphthoic acid, nysgrc target 029520.
    34% identity, 91% coverage of query (135 bits)

1je1A 5'-deoxy-5'-methylthioadenosine phosphorylase complex with guanosine and sulfate
    34% identity, 85% coverage of query (124 bits)

1jdtA Crystal structure of 5'-deoxy-5'-methylthioadenosine phosphorylase complexed with mta and sulfate ion
    33% identity, 85% coverage of query (124 bits)

1jdvC / P50389 Crystal structure of 5'-deoxy-5'-methylthioadenosine phosphorylase complexed with adenosine and sulfate ion (see paper)
    35% identity, 77% coverage of query (123 bits)

PNPH_SACS2 / P50389 Purine nucleoside phosphorylase; PNP; 5'-methylthioadenosine phosphorylase I; MTA phosphorylase I; MTAPI; EC 2.4.2.1; EC 2.4.2.28 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 3 papers)
P50389 S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28) from Saccharolobus solfataricus (see 4 papers)
    35% identity, 77% coverage of query (123 bits)

1jdzA Crystal structure of 5'-deoxy-5'-methylthioadenosine phosphorylase with formycin b and sulfate ion
    34% identity, 81% coverage of query (123 bits)

1jdvA Crystal structure of 5'-deoxy-5'-methylthioadenosine phosphorylase complexed with adenosine and sulfate ion
    34% identity, 81% coverage of query (123 bits)

1jdsA 5'-deoxy-5'-methylthioadenosine phosphorylase complex with phosphate (space group p21)
    34% identity, 81% coverage of query (123 bits)

Q72IR2 purine-nucleoside phosphorylase (EC 2.4.2.1) from Thermus thermophilus (see 2 papers)
    30% identity, 91% coverage of query (97.8 bits)

1odiA / Q5SID9 Purine nucleoside phosphorylase from thermus thermophilus (see paper)
    30% identity, 91% coverage of query (97.8 bits)

1odjA Purine nucleoside phosphorylase from thermus thermophilus
    30% identity, 91% coverage of query (97.8 bits)

3uaxA Crystal structure of adenosine phosphorylase from bacillus cereus complexed with inosine
    35% identity, 83% coverage of query (97.1 bits)

3uawA / Q5EEL8 Crystal structure of adenosine phosphorylase from bacillus cereus complexed with adenosine (see paper)
    36% identity, 78% coverage of query (96.3 bits)

deoD purine nucleoside phosphorylase; EC 2.4.2.1 from Bacillus anthracis (see paper)
    36% identity, 78% coverage of query (95.9 bits)

C8CPR9 purine-nucleoside phosphorylase (EC 2.4.2.1) from Pseudoalteromonas sp. (see paper)
    31% identity, 79% coverage of query (94.4 bits)

PNPH_PLAVS / A5K9M4 Purine nucleoside phosphorylase; PvPNP; EC 2.4.2.1 from Plasmodium vivax (strain Salvador I) (see paper)
    31% identity, 79% coverage of query (93.6 bits)

2iscD / A2E7Y6 Crystal structure of purine nucleoside phosphorylase from trichomonas vaginalis with dadme-imm-a (see paper)
    30% identity, 94% coverage of query (93.2 bits)

Build an alignment

Build an alignment for 7026537 and 56 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

1sq6A Plasmodium falciparum homolog of uridine phosphorylase/purine nucleoside phosphorylase
    28% identity, 79% coverage of query (93.2 bits)

8w7hA Purine nucleoside phosphorylase in complex with mmv000848
    28% identity, 79% coverage of query (93.2 bits)

5zniA Plasmodium falciparum purine nucleoside phosphorylase in complex with mefloquine
    28% identity, 79% coverage of query (93.2 bits)

PNP / Q8T9Z7 purine nucleoside phosphorylase monomer (EC 2.4.2.44; EC 2.4.2.1) from Plasmodium falciparum (see 3 papers)
PNPH_PLAF7 / Q8I3X4 Purine nucleoside phosphorylase; PfPNP; S-methyl-5'-thioinosine phosphorylase; EC 2.4.2.1; EC 2.4.2.44 from Plasmodium falciparum (isolate 3D7) (see 6 papers)
PNPH_PLAFA / Q8T9Z7 Purine nucleoside phosphorylase; S-methyl-5'-thioinosine phosphorylase; EC 2.4.2.1; EC 2.4.2.44 from Plasmodium falciparum (see 2 papers)
Q8I3X4 purine-nucleoside phosphorylase (EC 2.4.2.1); uridine phosphorylase (EC 2.4.2.3) from Plasmodium falciparum (see 3 papers)
Q8T9Z7 purine-nucleoside phosphorylase (EC 2.4.2.1) from Plasmodium falciparum (see 5 papers)
    28% identity, 79% coverage of query (92.8 bits)

3enzC / Q8I3X4 Arsenolytic structure of plasmodium falciparum purine nucleoside phosphorylase with hypoxanthine, ribose and arsenate ion (see paper)
    28% identity, 79% coverage of query (92.8 bits)

2bsxA Crystal structure of the plasmodium falciparum purine nucleoside phosphorylase complexed with inosine
    28% identity, 79% coverage of query (92.8 bits)

5zncA Plasmodium falciparum purine nucleoside phosphorylase in complex with quinine
    28% identity, 79% coverage of query (92.8 bits)

3phcA Crystal structure of plasmodium falciparum purine nucleoside phosphorylase in complex with dadme-immg
    28% identity, 79% coverage of query (92.8 bits)

1q1gA Crystal structure of plasmodium falciparum pnp with 5'-methylthio- immucillin-h
    28% identity, 79% coverage of query (92.8 bits)

1nw4A Crystal structure of plasmodium falciparum purine nucleoside phosphorylase in complex with immh and sulfate
    28% identity, 79% coverage of query (92.8 bits)

1z39A Crystal structure of trichomonas vaginalis purine nucleoside phosphorylase complexed with 2'-deoxyinosine
    29% identity, 90% coverage of query (92.0 bits)

1z38A Crystal structure of trichomonas vaginalis purine nucleoside phosphorylase complexed with inosine
    29% identity, 90% coverage of query (92.0 bits)

1z37A Crystal structure of trichomonas vaginalis purine nucleoside phosphorylase complexed with adenosine
    29% identity, 90% coverage of query (92.0 bits)

1z36A Crystal structure of trichomonas vaginalis purine nucleoside phosphorylase complexed with formycin a
    29% identity, 90% coverage of query (92.0 bits)

1z35A Crystal structure of trichomonas vaginalis purine nucleoside phosphorylase complexed with 2-fluoroadenosine
    29% identity, 90% coverage of query (92.0 bits)

1z34A Crystal structure of trichomonas vaginalis purine nucleoside phosphorylase complexed with 2-fluoro-2'-deoxyadenosine
    29% identity, 90% coverage of query (92.0 bits)

2i4tA Crystal structure of purine nucleoside phosphorylase from trichomonas vaginalis with imm-a
    31% identity, 85% coverage of query (92.0 bits)

1ovgA M64v pnp +mepdr
    30% identity, 81% coverage of query (92.0 bits)

1ov6A M64v pnp + allo
    30% identity, 81% coverage of query (92.0 bits)

1oumA M64v pnp +talo
    30% identity, 81% coverage of query (92.0 bits)

1pr5A Escherichia coli purine nucleoside phosphorylase complexed with 7- deazaadenosine and phosphate/sulfate
    30% identity, 81% coverage of query (91.7 bits)

1pr6A Escherichia coli purine nucleoside phosphorylase complexed with 9- beta-d-xylofuranosyladenine and phosphate/sulfate
    30% identity, 81% coverage of query (91.7 bits)

5iu6A Crystal structure of e.Coli purine nucleoside phosphorylase with 7- deazahypoxanthine
    30% identity, 81% coverage of query (91.7 bits)

5i3cA Crystal structure of e.Coli purine nucleoside phosphorylase with acycloguanosine
    30% identity, 81% coverage of query (91.7 bits)

3ut6A Crystal structure of e. Coli pnp complexed with po4 and formycin a
    30% identity, 81% coverage of query (91.7 bits)

1pw7A Crystal structure of e. Coli purine nucleoside phosphorylase complexed with 9-beta-d-arabinofuranosyladenine and sulfate/phosphate
    30% identity, 81% coverage of query (91.7 bits)

1pr0A Escherichia coli purine nucleoside phosphorylase complexed with inosine and phosphate/sulfate
    30% identity, 81% coverage of query (91.7 bits)

1pkeA Crystal structure of e. Coli purine nucleoside phosphorylase complexed with 2-fluoro-2'-deoxyadenosine and sulfate/phosphate
    30% identity, 81% coverage of query (91.7 bits)

1pk9A Crystal structure of e. Coli purine nucleoside phosphorylase complexed with 2-fluoroadenosine and sulfate/phosphate
    30% identity, 81% coverage of query (91.7 bits)

1pk7A Crystal structure of e. Coli purine nucleoside phosphorylase complexed with adenosine and sulfate/phosphate
    30% identity, 81% coverage of query (91.7 bits)

1otyA Native pnp +allo
    30% identity, 81% coverage of query (91.7 bits)

1k9sD Purine nucleoside phosphorylase from e. Coli in complex with formycin a derivative and phosphate
    30% identity, 81% coverage of query (91.7 bits)

1k9sA Purine nucleoside phosphorylase from e. Coli in complex with formycin a derivative and phosphate
    30% identity, 81% coverage of query (91.7 bits)

1a69A Purine nucleoside phosphorylase in complex with formycin b and sulphate (phosphate)
    30% identity, 81% coverage of query (91.7 bits)

Pup / b4384 purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
deoD / P0ABP8 purine nucleoside phosphorylase (EC 2.4.2.15; EC 2.4.2.1) from Escherichia coli (strain K12) (see 30 papers)
DEOD_ECOLI / P0ABP8 Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Escherichia coli (strain K12) (see 5 papers)
deoD / RF|NP_418801 purine nucleoside phosphorylase deoD-type; EC 2.4.2.1 from Escherichia coli K12 (see 13 papers)
    30% identity, 81% coverage of query (91.3 bits)

1pr4A Escherichia coli purine nucleoside phosphorylase complexed with 9- beta-d-ribofuranosyl-6-methylthiopurine and phosphate/sulfate
    30% identity, 81% coverage of query (91.3 bits)

P0ABP9 Purine nucleoside phosphorylase DeoD-type; PNP; EC 2.4.2.1 from Escherichia coli O157:H7
    30% identity, 81% coverage of query (91.3 bits)

O34925 purine-nucleoside phosphorylase (EC 2.4.2.1) from Bacillus subtilis (see paper)
    31% identity, 84% coverage of query (89.7 bits)

4daeA / O34925 Crystal structure of the hexameric purine nucleoside phosphorylase from bacillus subtilis in complex with 6-chloroguanosine (see paper)
    31% identity, 84% coverage of query (89.7 bits)

4danA Crystal structure of the hexameric purine nucleoside phosphorylase from bacillus subtilis in complex with 2-fluoroadenosine
    31% identity, 84% coverage of query (89.7 bits)

4da0A Crystal structure of the hexameric purine nucleoside phosphorylase from bacillus subtilis in complex with 2'-deoxyguanosine
    31% identity, 84% coverage of query (89.7 bits)

4darA Crystal structure of the hexameric purine nucleoside phosphorylase from bacillus subtilis in complex with tubercidin
    31% identity, 83% coverage of query (89.7 bits)

4dabA Crystal structure of the hexameric purine nucleoside phosphorylase from bacillus subtilis in complex with hypoxanthine
    31% identity, 83% coverage of query (89.7 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory