Sites on a Tree

 

Searching for up to 100 curated homologs for 8499845 FitnessBrowser__Miya:8499845 (629 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

IORA_METTM / P80910 Indolepyruvate oxidoreductase subunit IorA; IOR; Indolepyruvate ferredoxin oxidoreductase subunit alpha; EC 1.2.7.8 from Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg) (Methanobacterium thermoautotrophicum) (see paper)
    44% identity, 94% coverage of query (476 bits)

iorA / A0A5C0XP98 indolepyruvate ferredoxin oxidoreductase α subunit (EC 1.2.7.8) from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see paper)
    39% identity, 95% coverage of query (418 bits)

O07835 indolepyruvate ferredoxin oxidoreductase (subunit 2/2) (EC 1.2.7.8) from Thermococcus kodakarensis (see paper)
    40% identity, 96% coverage of query (408 bits)

Q6LZB6 indolepyruvate ferredoxin oxidoreductase (subunit 2/2) (EC 1.2.7.8) from Methanococcus maripaludis (see paper)
    39% identity, 93% coverage of query (399 bits)

Q6M0F5 indolepyruvate ferredoxin oxidoreductase (subunit 2/2) (EC 1.2.7.8) from Methanococcus maripaludis (see paper)
    38% identity, 94% coverage of query (393 bits)

Build an alignment

Build an alignment for 8499845 and 5 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

Psest_3517 branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate from Pseudomonas stutzeri RCH2
    26% identity, 84% coverage of query (95.1 bits)

RR42_RS34245 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused from Cupriavidus basilensis FW507-4G11
    24% identity, 86% coverage of query (89.7 bits)

HP15_859 phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) from Marinobacter adhaerens HP15
    26% identity, 75% coverage of query (88.6 bits)

RR42_RS19540 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (EC 1.2.7.7) from Cupriavidus basilensis FW507-4G11
    23% identity, 76% coverage of query (82.4 bits)

salQ / B0L7F0 5-chloro-4-hydroxy-2-oxopentanoate decarboxylase (acylating) from Salinispora tropica (see paper)
    25% identity, 75% coverage of query (79.3 bits)

BPHYT_RS02015 phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) from Burkholderia phytofirmans PsJN
    21% identity, 93% coverage of query (72.8 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory