Sites on a Tree

 

Searching for up to 100 curated homologs for 8501006 FitnessBrowser__Miya:8501006 (321 a.a.)

Found high-coverage hits (≥70%) to 6 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

trpC / AAB39010.1 indole-3-glycerol-phosphate synthase from Bradyrhizobium japonicum (see paper)
    36% identity, 75% coverage of query (119 bits)

TRPC_ARATH / P49572 Indole-3-glycerol phosphate synthase, chloroplastic; IGPS; EC 4.1.1.48 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
    31% identity, 83% coverage of query (110 bits)

1jcmP Trpc stability mutant containing an engineered disulphide bridge and in complex with a cdrp-related substrate
    34% identity, 77% coverage of query (104 bits)

1piiA / P00909 Three-dimensional structure of the bifunctional enzyme phosphoribosylanthranilate isomerase: indoleglycerolphosphate synthase from escherichia coli refined at 2.0 angstroms resolution (see paper)
    34% identity, 77% coverage of query (103 bits)

TrpC / b1262 fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli K-12 substr. MG1655 (see 17 papers)
trpC / P00909 fused indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase (EC 4.1.1.48; EC 5.3.1.24) from Escherichia coli (strain K12) (see 16 papers)
P00909 phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Escherichia coli (see 2 papers)
    34% identity, 77% coverage of query (103 bits)

P24920 phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Phytophthora parasitica (see paper)
    33% identity, 72% coverage of query (96.7 bits)

Build an alignment

Build an alignment for 8501006 and 6 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory