Searching for up to 100 curated homologs for 8501223 FitnessBrowser__Miya:8501223 (358 a.a.)
Found high-coverage hits (≥70%) to 33 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
PotD / b1123 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
PotD / P0AFK9 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11) from Escherichia coli (strain K12) (see 11 papers)
POTD_ECOLI / P0AFK9 Spermidine/putrescine-binding periplasmic protein; SPBP from Escherichia coli (strain K12) (see paper)
TC 3.A.1.11.1 / P0AFK9 Spermidine/putrescine-binding periplasmic protein PotD aka B1123, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli (see 8 papers)
potD spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein PotD from Escherichia coli K12 (see 9 papers)
51% identity, 91% coverage of query (354 bits)
1poy1 / P0AFK9 Spermidine/putrescine-binding protein complexed with spermidine (dimer form) (see paper)
52% identity, 89% coverage of query (352 bits)
7xjnA / Q9KS37 Structure of vcpotd1 in complex with norspermidine
48% identity, 90% coverage of query (322 bits)
TC 3.A.1.11.7 / Q97Q45 Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
37% identity, 97% coverage of query (244 bits)
4eqbA 1.5 angstrom crystal structure of spermidine/putrescine abc transporter substrate-binding protein potd from streptococcus pneumoniae strain canada mdr_19a in complex with calcium and hepes
39% identity, 87% coverage of query (240 bits)
A0A116LEI2 ABC-type polyamine transporter (subunit 1/4) (EC 7.6.2.11) from Streptococcus suis (see paper)
37% identity, 94% coverage of query (229 bits)
Q8YM93 ABC-type polyamine transporter (subunit 2/3) (EC 7.6.2.11) from Nostoc sp. PCC 7120 = FACHB-418 (see paper)
35% identity, 97% coverage of query (219 bits)
SPUE_PSEAE / Q9I6J0 Spermidine-binding periplasmic protein SpuE from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
36% identity, 96% coverage of query (200 bits)
O83661 ABC-type putrescine transporter (EC 7.6.2.16) from Treponema pallidum (see paper)
34% identity, 94% coverage of query (193 bits)
SPUD_PSEAB / Q02UB7 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
SPUD_PSEAE / Q9I6J1 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
35% identity, 95% coverage of query (192 bits)
3ttnA / Q9I6J0 Crystal structures of polyamine receptors spud and spue from pseudomonas aeruginosa (see paper)
36% identity, 82% coverage of query (183 bits)
3ttmA / Q9I6J1 Crystal structure of spud in complex with putrescine (see paper)
34% identity, 90% coverage of query (183 bits)
7oywA / P31133 E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88l s247d in complex with spermidine (see paper)
32% identity, 90% coverage of query (175 bits)
7oyvA E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88a s247d in complex with spermidine
32% identity, 90% coverage of query (174 bits)
PotF / b0854 putrescine ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
PotF / P31133 putrescine ABC transporter periplasmic binding protein (EC 7.6.2.11) from Escherichia coli (strain K12) (see 5 papers)
POTF_ECOLI / P31133 Putrescine-binding periplasmic protein PotF from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.11.2 / P31133 PotF aka B0854, component of Putrescine porter from Escherichia coli (see 7 papers)
32% identity, 96% coverage of query (173 bits)
7oyxB E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d y87s f88y s247d in complex with spermidine
31% identity, 90% coverage of query (172 bits)
6ye7A E.Coli's putrescine receptor potf complexed with cadaverine
31% identity, 90% coverage of query (166 bits)
6ye6A E.Coli's putrescine receptor potf complexed with agmatine
31% identity, 90% coverage of query (166 bits)
6ye0B E.Coli's putrescine receptor potf complexed with putrescine
31% identity, 90% coverage of query (166 bits)
1a99A Putrescine receptor (potf) from e. Coli
31% identity, 90% coverage of query (166 bits)
PAGBP_PSEAE / Q9I0P5 Putrescine/agmatine-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
31% identity, 89% coverage of query (150 bits)
PCABP_PSEAE / Q9HY16 Putrescine/cadaverine-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
31% identity, 83% coverage of query (145 bits)
Build an alignment for 8501223 and 22 homologs with ≥ 30% identity
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NSPS_VIBCH / Q9KU25 Norspermidine sensor; Norspermidine-binding protein from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see paper)
24% identity, 84% coverage of query (73.2 bits)
YdcS / b1440 putative ABC transporter periplasmic binding protein / polyhydroxybutyrate synthase from Escherichia coli K-12 substr. MG1655 (see 12 papers)
ydcS / P76108 putative ABC transporter periplasmic binding protein / polyhydroxybutyrate synthase (EC 2.3.1.304) from Escherichia coli (strain K12) (see 12 papers)
YDCS_ECOLI / P76108 Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein; Poly-3-hydroxybutyrate synthase; PHB synthase; cPHB synthase; EC 2.3.1.- from Escherichia coli (strain K12) (see 3 papers)
25% identity, 80% coverage of query (70.9 bits)
6hlyA Structure in p212121 form of the pbp agtb in complex with agropinic acid from a.Tumefacien r10 (see paper)
26% identity, 79% coverage of query (67.0 bits)
4euoA / A9CGA5 Structure of atu4243-gaba sensor (see paper)
26% identity, 83% coverage of query (57.4 bits)
TC 3.A.1.11.6 / Q1M7Q4 Putative spermidine/putrescine-binding periplasmic protein ABC transporter component, component of The γ-aminobutyrate (GABA) uptake system, GtsABCD from Rhizobium leguminosarum bv. viciae (strain 3841) (see paper)
25% identity, 82% coverage of query (48.9 bits)
3e13X / Q0PBW4 Iron reconstituted ferric binding protein from campylobacter jejuni
24% identity, 75% coverage of query (46.2 bits)
5l9gA Crystal structure of the pbp mota in complex with mannopine from a. Tumefaciens b6
23% identity, 75% coverage of query (43.5 bits)
6tg2A Structure of the pbp/sbp mota in complex with mannopinic acid from a.Tumefacien r10
23% identity, 75% coverage of query (43.5 bits)
5l9iA Crystal structure of the periplasmic binding protein mota in complex with dfg from a. Tumefaciens b6
23% identity, 75% coverage of query (43.5 bits)
6tg3D / Q44384 Crystal structure of the pbp/sbp mota in complex with glucopinic acid from a. Tumefaciens b6/r10 (see paper)
23% identity, 75% coverage of query (43.5 bits)
5l9lA Crystal structure of the pbp mota from a. Tumefaciens b6 in complex with glucopine
23% identity, 75% coverage of query (43.5 bits)
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Lawrence Berkeley National Laboratory