Sites on a Tree

 

Searching for up to 100 curated homologs for AO353_05900 FitnessBrowser__pseudo3_N2E3:AO353_05900 (449 a.a.)

Found high-coverage hits (≥70%) to 11 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

RR42_RS28835 gluconate:H+ symporter (gntT) from Cupriavidus basilensis FW507-4G11
    67% identity, 96% coverage of query (580 bits)

BPHYT_RS16725 gluconate:H+ symporter (gntT) from Burkholderia phytofirmans PsJN
    61% identity, 100% coverage of query (531 bits)

TC 2.A.8.1.1 / P12012 D-Gluconate:H+ symporter of 448 aas and 11 TMSs from Bacillus subtilis (see 3 papers)
    43% identity, 98% coverage of query (353 bits)

YhgC / b3415 high-affinity gluconate transporter from Escherichia coli K-12 substr. MG1655 (see 5 papers)
gntT / P39835 high-affinity gluconate transporter from Escherichia coli (strain K12) (see 4 papers)
GNTT_ECOLI / P39835 High-affinity gluconate transporter; Gluconate permease; Gnt-I system from Escherichia coli (strain K12) (see paper)
TC 2.A.8.1.4 / P39835 D-Gluconate:H+ symporter, GntT from Escherichia coli (see 9 papers)
    45% identity, 95% coverage of query (351 bits)

YjgT / b4265 L-idonate/5-ketogluconate/gluconate transporter from Escherichia coli K-12 substr. MG1655 (see paper)
idnT / P39344 L-idonate/5-ketogluconate/gluconate transporter from Escherichia coli (strain K12) (see 5 papers)
IDNT_ECOLI / P39344 Gnt-II system L-idonate transporter; L-Ido transporter; L-idonate transporter; 5-keto-D-gluconate transporter; L-idonate/5-ketogluconate/gluconate transporter from Escherichia coli (strain K12) (see 5 papers)
TC 2.A.8.1.2 / P39344 L-Idonate/D-Gluconate:H+ symporter, IdnT, GntW, YjgT from Escherichia coli (see 5 papers)
    41% identity, 98% coverage of query (324 bits)

YjhF / b4296 KpLE2 phage-like element; putative transporter YjhF from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    41% identity, 91% coverage of query (296 bits)

DSDX_ECOL6 / A0A0H2VAP9 D-serine transporter DsdX; D-serine-specific permease from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (see paper)
    37% identity, 98% coverage of query (285 bits)

DsdC / b2365 D-serine transporter from Escherichia coli K-12 substr. MG1655 (see 4 papers)
DSDX_ECOLI / P08555 D-serine transporter DsdX from Escherichia coli (strain K12) (see 2 papers)
TC 2.A.8.1.5 / P08555 The D-serine transporter, DsdX (KM=60µM) (may also transport D-threonine which inhibits D-serine uptake) (Anfora and Welch, 2006). Eliminating the dsdX gene renders the cell more sensitive to chloramphenicol from Escherichia coli (strain K12) (see 9 papers)
    37% identity, 98% coverage of query (284 bits)

YjiB / b4321 fructuronate transporter from Escherichia coli K-12 substr. MG1655 (see 6 papers)
gntP / P0AC94 fructuronate transporter from Escherichia coli (strain K12) (see 6 papers)
TC 2.A.8.1.3 / P0AC94 D-Fructuronate/D-gluconate:H+ symporter, GntP from Escherichia coli (see 5 papers)
    33% identity, 96% coverage of query (254 bits)

GntU / b4476 low-affinity gluconate transporter from Escherichia coli K-12 substr. MG1655 (see 4 papers)
gntU / P0AC96 low-affinity gluconate transporter from Escherichia coli (strain K12) (see 4 papers)
TC 2.A.8.1.8 / P0AC96 Low-affinity (212 from Escherichia coli (strain K12) (see 7 papers)
    35% identity, 96% coverage of query (232 bits)

YgbN / b2740 putative transporter YgbN from Escherichia coli K-12 substr. MG1655 (see 4 papers)
    33% identity, 97% coverage of query (212 bits)

Build an alignment

Build an alignment for AO353_05900 and 11 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory