Sites on a Tree

 

Searching for up to 100 curated homologs for AO353_05955 FitnessBrowser__pseudo3_N2E3:AO353_05955 (163 a.a.)

Found high-coverage hits (≥70%) to 12 curated proteins.

Removed hits that are identical to the query, leaving 11

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

PS417_23690 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) from Pseudomonas simiae WCS417
    91% identity, 100% coverage of query (312 bits)

PfGW456L13_2739 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) from Pseudomonas fluorescens GW456-L13
    77% identity, 98% coverage of query (261 bits)

ANTDB_ACIAD / O85674 Anthranilate 1,2-dioxygenase small subunit; EC 1.14.12.1 from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) (see paper)
antB / RF|YP_047247.1 anthranilate 1,2-dioxygenase, small subunit; EC 1.14.12.1 from Acinetobacter sp. ADP1 (see paper)
    56% identity, 100% coverage of query (201 bits)

A8I4F1 benzoate 4-monooxygenase (EC 1.14.14.92) from Chromohalobacter sp. (see paper)
    42% identity, 95% coverage of query (142 bits)

benB / AAC46437.1 BenB from Acinetobacter baylyi (see 8 papers)
    38% identity, 96% coverage of query (129 bits)

tftB / Q51593 2,4,5-trichlorophenoxyacetate hydroxylase oxygenase component β subunit from Burkholderia cepacia (see 2 papers)
    34% identity, 93% coverage of query (107 bits)

Build an alignment

Build an alignment for AO353_05955 and 6 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

cmtAc / Q51975 p-cumate 2,3-dioxygenase system, small oxygenase component (EC 1.14.12.25) from Pseudomonas putida (see paper)
CMTAC_PSEPU / Q51975 p-cumate 2,3-dioxygenase system, small oxygenase component; Small terminal subunit of p-cumate dioxygenase; p-cumate 2,3-dioxygenase small subunit; p-cumate 2,3-dioxygenase subunit beta from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
Q51975 p-cumate 2,3-dioxygenase (subunit 2/4) (EC 1.14.12.25) from Pseudomonas putida (see paper)
cmtAc / AAB62286.1 p-cumate dioxygenase small subunit from Pseudomonas putida (see 3 papers)
    29% identity, 87% coverage of query (58.2 bits)

dbfA2 / BAC75994.1 angular dioxygenase small subunit from Terrabacter sp. DBF63 (see paper)
    31% identity, 89% coverage of query (57.4 bits)

iacD / B0FXI3 2-(3-hydroxy-2-oxo-1H-indol-3-yl)acetate dioxygenase IacD subunit from Pseudomonas putida (see 2 papers)
    26% identity, 93% coverage of query (54.7 bits)

HcaA / b2539 putative 3-phenylpropionate/cinnamate dioxygenase subunit β (EC 1.14.12.19) from Escherichia coli K-12 substr. MG1655 (see 3 papers)
hcaF / Q47140 putative 3-phenylpropionate/cinnamate dioxygenase subunit β (EC 1.14.12.19) from Escherichia coli (strain K12) (see 2 papers)
HCAF_ECOLI / Q47140 3-phenylpropionate/cinnamic acid dioxygenase subunit beta; EC 1.14.12.19 from Escherichia coli (strain K12) (see paper)
    29% identity, 94% coverage of query (52.4 bits)

XYLC2 / AAC44162.1 iron sulfur protein small subunit from Cycloclasticus oligotrophus (see paper)
    26% identity, 92% coverage of query (45.1 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory