Searching for up to 100 curated homologs for AO353_13110 FitnessBrowser__pseudo3_N2E3:AO353_13110 (203 a.a.)
Found high-coverage hits (≥70%) to 15 curated proteins.
Removed hits that are identical to the query, leaving 14
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
PfGW456L13_161 putative transporter, required for glycine utilization from Pseudomonas fluorescens GW456-L13
96% identity, 100% coverage of query (372 bits)
Pf6N2E2_3621 putative transporter, required for glycine utilization from Pseudomonas fluorescens FW300-N2E2
96% identity, 100% coverage of query (367 bits)
PS417_02455 putative transporter, required for glycine utilization from Pseudomonas simiae WCS417
91% identity, 100% coverage of query (367 bits)
YicG / b3646 PF03458 family inner membrane protein YicG from Escherichia coli K-12 substr. MG1655 (see 2 papers)
57% identity, 100% coverage of query (221 bits)
Psest_1636 putative transporter, required for glycine utilization from Pseudomonas stutzeri RCH2
52% identity, 97% coverage of query (212 bits)
SO3342 putative transporter, required for L-alanine utilization from Shewanella oneidensis MR-1
51% identity, 98% coverage of query (202 bits)
Shewana3_1204 putative transporter, required for glycine and L-alanine utilization from Shewanella sp. ANA-3
51% identity, 97% coverage of query (200 bits)
SO1319 putative transporter, required for glycine utilization from Shewanella oneidensis MR-1
40% identity, 91% coverage of query (143 bits)
TC 1.A.62.2.1 / A0M015 Bacterial TRIC family homologue from Gramella forsetii (strain KT0803) (see paper)
34% identity, 92% coverage of query (139 bits)
TC 1.A.62.3.1 / Q981D4 Archaeal TRIC family homologue of 205 aas and 7 TMSs from Sulfolobus solfataricus (see paper)
30% identity, 97% coverage of query (119 bits)
YadS / b0157 PF03458 family protein YadS from Escherichia coli K-12 substr. MG1655 (see 2 papers)
41% identity, 93% coverage of query (115 bits)
TC 1.A.62.2.4 / A4WTL9 TRIC family homologue of 213 aas and 7 TMSs; it's high resolution 3-d structure is known (PDB# 5H36). TRIC channels are implicated in Ca2+ signaling and homeostasis from Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
39% identity, 91% coverage of query (108 bits)
PGA1_c00920 putative transporter, required for glycine utilization from Phaeobacter inhibens BS107
33% identity, 97% coverage of query (101 bits)
TC 1.A.62.3.2 / Q9RKM3 UPF0126 of 7 TMSs. Adjacent to genes encoding a putative oligopeptide ABC uptake permease that controls sporulation and actinorhodin production (TC#3.A.1.5.34) from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
36% identity, 96% coverage of query (81.6 bits)
Build an alignment for AO353_13110 and 14 homologs with ≥ 30% identity
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Lawrence Berkeley National Laboratory