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Searching for up to 100 curated homologs for AO353_23370 FitnessBrowser__pseudo3_N2E3:AO353_23370 (129 a.a.)

Found high-coverage hits (≥70%) to 100 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

cy2 / A9CGJ2 cytochrome c2 from Agrobacterium fabrum (strain C58 / ATCC 33970) (see 2 papers)
    41% identity, 97% coverage of query (110 bits)

CYC2_AFIMA / P86321 Cytochrome c2 from Afifella marina (Rhodobium marinum) (Rhodopseudomonas marina) (see paper)
    47% identity, 79% coverage of query (103 bits)

1co6A / P00083 Crystal structure of ferrocytochrome c2 from rhodopseudomonas viridis (see paper)
    44% identity, 78% coverage of query (102 bits)

C554_METTR / D5QVH0 Cytochrome c-554; Cytochrome c class I from Methylosinus trichosporium (see paper)
    41% identity, 98% coverage of query (102 bits)

P00069 Cytochrome c from Guizotia abyssinica (Niger) (Ramtilla)
    46% identity, 78% coverage of query (102 bits)

P00053 Cytochrome c from Cannabis sativa (Hemp) (Marijuana)
    45% identity, 77% coverage of query (102 bits)

P00067 Cytochrome c from Tropaeolum majus (Common nasturtium) (Indian cress)
    46% identity, 78% coverage of query (101 bits)

P00071 Cytochrome c from Pastinaca sativa (Wild parsnip) (Anethum pastinaca)
    45% identity, 77% coverage of query (99.8 bits)

P00015 Cytochrome c, testis-specific from Mus musculus (Mouse)
    45% identity, 77% coverage of query (99.8 bits)

P00052 Cytochrome c from Vigna radiata var. radiata (Mung bean) (Phaseolus aureus)
    44% identity, 77% coverage of query (99.8 bits)

2aiuA / P00015 Crystal structure of mouse testicular cytochromE C at 1.6 angstrom (see paper)
    45% identity, 77% coverage of query (99.4 bits)

P00066 Cytochrome c from Nigella damascena (Love-in-a-mist)
    43% identity, 78% coverage of query (99.4 bits)

Q0DI31 Cytochrome c from Oryza sativa subsp. japonica (Rice)
    44% identity, 77% coverage of query (99.4 bits)

CYC2_BLAVI / P00083 Cytochrome c2 from Blastochloris viridis (Rhodopseudomonas viridis) (see paper)
    43% identity, 76% coverage of query (99.0 bits)

P00051 Cytochrome c from Cucurbita maxima (Pumpkin) (Winter squash)
    44% identity, 77% coverage of query (99.0 bits)

1ccrA / Q0DI31 Structure of rice ferricytochromE C at 2.0 angstroms resolution (see paper)
    44% identity, 77% coverage of query (98.6 bits)

P68519 Cytochrome c from Crotalus viridis viridis (Prairie rattlesnake)
    41% identity, 77% coverage of query (98.6 bits)

P68518 Cytochrome c from Crotalus atrox (Western diamondback rattlesnake)
    41% identity, 77% coverage of query (98.6 bits)

P68517 Cytochrome c from Crotalus adamanteus (Eastern diamondback rattlesnake)
    41% identity, 77% coverage of query (98.6 bits)

P00028 Cytochrome c from Entosphenus tridentatus (Pacific lamprey) (Lampetra tridentata)
    44% identity, 77% coverage of query (98.6 bits)

P00074 Cytochrome c from Ginkgo biloba (Ginkgo) (Maidenhair tree)
    43% identity, 77% coverage of query (98.2 bits)

P00058 Cytochrome c from Gossypium barbadense (Sea-island cotton) (Egyptian cotton)
    45% identity, 77% coverage of query (98.2 bits)

P00070 Cytochrome c from Helianthus annuus (Common sunflower)
    44% identity, 78% coverage of query (98.2 bits)

1akkA / P00004 Solution structure of oxidized horse heart cytochromE C, nmr, minimized average structure (see paper)
    43% identity, 77% coverage of query (97.8 bits)

P00027 Cytochrome c from Squalus suckleyi (Puget Sound dogfish) (Spinax suckleyi)
    42% identity, 77% coverage of query (97.8 bits)

6suvAaA Cytochrome c
    43% identity, 77% coverage of query (97.8 bits)

4rszA The x-ray structure of the primary adduct formed in the reaction between cisplatin and cytochromE C
    43% identity, 77% coverage of query (97.8 bits)

1wejF Igg1 fab fragment (of e8 antibody) complexed with horse cytochromE C at 1.8 a resolution
    43% identity, 77% coverage of query (97.8 bits)

1m60A Solution structure of zinc-substituted cytochromE C
    43% identity, 77% coverage of query (97.8 bits)

1fi7A Solution structure of the imidazole complex of cytochromE C
    43% identity, 77% coverage of query (97.8 bits)

P00054 Cytochrome c from Sesamum indicum (Oriental sesame) (Sesamum orientale)
    43% identity, 77% coverage of query (97.8 bits)

P00004 Cytochrome c from Equus caballus (Horse)
    43% identity, 77% coverage of query (97.8 bits)

P00038 Cytochrome c from Apis mellifera (Honeybee)
    40% identity, 78% coverage of query (97.8 bits)

CYC_ALLPO / P00064 Cytochrome c from Allium porrum (Leek) (Allium ampeloprasum var. porrum) (see paper)
    44% identity, 77% coverage of query (97.4 bits)

CYCS / P99999 cytochrome c from Homo sapiens (see 7 papers)
CYC_HUMAN / P99999 Cytochrome c from Homo sapiens (Human) (see paper)
    43% identity, 77% coverage of query (97.4 bits)

P62773 Cytochrome c from Brassica oleracea (Wild cabbage)
    44% identity, 77% coverage of query (97.4 bits)

P62772 Cytochrome c from Brassica napus (Rape)
    44% identity, 77% coverage of query (97.4 bits)

P00073 Cytochrome c from Spinacia oleracea (Spinach)
    42% identity, 77% coverage of query (97.4 bits)

P00059 Cytochrome c from Abutilon theophrasti (Velvet-leaf) (Sida abutilon)
    45% identity, 77% coverage of query (97.4 bits)

P00061 Cytochrome c from Solanum tuberosum (Potato)
    44% identity, 77% coverage of query (97.1 bits)

P00072 Cytochrome c from Fagopyrum esculentum (Common buckwheat) (Polygonum fagopyrum)
    43% identity, 77% coverage of query (96.7 bits)

CYC_BOVIN / P62894 Cytochrome c from Bos taurus (Bovine) (see 2 papers)
    43% identity, 77% coverage of query (96.3 bits)

P00062 Cytochrome c from Sambucus nigra (European elder)
    44% identity, 77% coverage of query (96.3 bits)

P00014 Cytochrome c from Macropus giganteus (Eastern gray kangaroo)
    43% identity, 77% coverage of query (96.3 bits)

6ff5A X-ray structure of bovine heart cytochromE C at high ionic strength
    43% identity, 77% coverage of query (96.3 bits)

P00057 Cytochrome c from Ricinus communis (Castor bean)
    44% identity, 77% coverage of query (96.3 bits)

P00026 Cytochrome c iso-1/iso-2 from Cyprinus carpio (Common carp)
    43% identity, 78% coverage of query (96.3 bits)

CYC1_ARATH / O23138 Cytochrome c-1; Cytochrome c At1g22840 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
    44% identity, 77% coverage of query (95.9 bits)

cycA / AAA74907.1 cytochrome c550 from Bradyrhizobium japonicum (see paper)
    43% identity, 79% coverage of query (95.9 bits)

P00002 Cytochrome c from Macaca mulatta (Rhesus macaque)
    43% identity, 77% coverage of query (95.9 bits)

P00065 Cytochrome c from Arum maculatum (Cuckoo-pint)
    43% identity, 77% coverage of query (95.9 bits)

5dfsA / P00003 Crystal structure of spider monkey cytochromE C at 1.15 angstrom (see paper)
    41% identity, 77% coverage of query (95.5 bits)

CYC1_ASCSU / P92504 Cytochrome c type-1 from Ascaris suum (Pig roundworm) (Ascaris lumbricoides) (see paper)
    44% identity, 81% coverage of query (95.5 bits)

CYC2_DROME / P84029 Cytochrome c-2; Cytochrome c-proximal from Drosophila melanogaster (Fruit fly) (see 2 papers)
    42% identity, 78% coverage of query (95.5 bits)

2n3yA Nmr structure of the y48pcmf variant of human cytochromE C in its reduced state
    42% identity, 77% coverage of query (95.5 bits)

P00060 Cytochrome c from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
    44% identity, 77% coverage of query (95.5 bits)

P00018 Cytochrome c from Dromaius novaehollandiae (Emu)
    42% identity, 77% coverage of query (95.1 bits)

P00068 Cytochrome c from Triticum aestivum (Wheat)
    43% identity, 77% coverage of query (94.7 bits)

P00022 Cytochrome c from Chelydra serpentina (Snapping turtle) (Testudo serpentina)
    42% identity, 77% coverage of query (94.7 bits)

P00008 Cytochrome c from Oryctolagus cuniculus (Rabbit)
    41% identity, 77% coverage of query (94.7 bits)

1lfmA Crystal structure of cobalt(iii)-substituted cytochromE C (tuna)
    43% identity, 78% coverage of query (94.4 bits)

1i54A CytochromE C (tuna) 2fe:1zn mixed-metal porphyrins
    43% identity, 78% coverage of query (94.4 bits)

P00007 Cytochrome c from Hippopotamus amphibius (Hippopotamus)
    42% identity, 77% coverage of query (94.4 bits)

P68098 Cytochrome c from Lama guanicoe (Guanaco) (Lama glama guanicoe)
    42% identity, 77% coverage of query (94.4 bits)

P68100 Cytochrome c from Eschrichtius robustus (California gray whale) (Eschrichtius gibbosus)
    42% identity, 77% coverage of query (94.4 bits)

P68099 Cytochrome c from Camelus dromedarius (Dromedary) (Arabian camel)
    42% identity, 77% coverage of query (94.4 bits)

1cycA / P00025 The crystal structure of bonito (katsuo) ferrocytochromE C at 2.3 angstroms resolution. Ii. Structure and function (see paper)
    43% identity, 78% coverage of query (94.0 bits)

P00025 Cytochrome c from Katsuwonus pelamis (Skipjack tuna) (Bonito)
    43% identity, 78% coverage of query (94.0 bits)

P00031 Cytochrome c from Macrobrachium malcolmsonii (Monsoon river-prawn) (Palaemon malcolmsonii)
    40% identity, 77% coverage of query (94.0 bits)

P00017 Cytochrome c from Aptenodytes patagonicus (King penguin)
    42% identity, 77% coverage of query (94.0 bits)

P00063 Cytochrome c from Acer negundo (Box elder)
    44% identity, 77% coverage of query (93.6 bits)

P00011 Cytochrome c from Canis lupus familiaris (Dog) (Canis familiaris)
    42% identity, 77% coverage of query (93.6 bits)

P00012 Cytochrome c from Mirounga leonina (Southern elephant seal) (Phoca leonina)
    42% identity, 77% coverage of query (93.6 bits)

P00020 Cytochrome c from Anas platyrhynchos (Mallard) (Anas boschas)
    41% identity, 77% coverage of query (93.6 bits)

P00019 Cytochrome c from Struthio camelus (Common ostrich)
    41% identity, 77% coverage of query (93.2 bits)

CYC_MOUSE / P62897 Cytochrome c, somatic from Mus musculus (Mouse) (see paper)
    41% identity, 77% coverage of query (92.8 bits)

P62898 Cytochrome c, somatic from Rattus norvegicus (Rat)
    41% identity, 77% coverage of query (92.8 bits)

5c0zB The structure of oxidized rat cytochromE C at 1.13 angstroms resolution
    41% identity, 77% coverage of query (92.8 bits)

P67882 Cytochrome c from Meleagris gallopavo (Wild turkey)
    41% identity, 77% coverage of query (92.4 bits)

P67881 Cytochrome c from Gallus gallus (Chicken)
    41% identity, 77% coverage of query (92.4 bits)

P81280 Cytochrome c from Alligator mississippiensis (American alligator)
    41% identity, 77% coverage of query (92.0 bits)

2yk3A / P00078 Crithidia fasciculata cytochromE C (see paper)
    42% identity, 79% coverage of query (91.7 bits)

P00080 Cytochrome c2 from Rhodopila globiformis (Rhodopseudomonas globiformis)
    44% identity, 79% coverage of query (91.7 bits)

P00078 Cytochrome c; Cytochrome c555 from Crithidia fasciculata
    42% identity, 79% coverage of query (91.7 bits)

P19974 Cytochrome c 2.1 from Caenorhabditis elegans
    42% identity, 78% coverage of query (91.7 bits)

P00046 Cytochrome c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
    40% identity, 78% coverage of query (91.7 bits)

P21665 Cytochrome c from Varanus varius (Lace monitor lizard) (Lacerta varia)
    40% identity, 77% coverage of query (91.3 bits)

P00047 Cytochrome c from Thermomyces lanuginosus (Humicola lanuginosa)
    40% identity, 77% coverage of query (91.3 bits)

7ljxA Oxidized rat cytochromE C mutant (k53q)
    40% identity, 77% coverage of query (91.3 bits)

CYC21_RHOTP / P86322 Cytochrome c2 from Rhodoplanes tepidamans (Rhodoplanes cryptolactis) (see paper)
    42% identity, 80% coverage of query (90.5 bits)

cycA cytochrome c from Emericella nidulans (see 2 papers)
    40% identity, 77% coverage of query (90.5 bits)

1hroA / P00080 Molecular structure of a high potential cytochrome c2 isolated from rhodopila globiformis (see paper)
    44% identity, 79% coverage of query (90.5 bits)

P00037 Cytochrome c from Samia cynthia (Ailanthus silkmoth) (Phalaena cynthia)
    40% identity, 78% coverage of query (90.5 bits)

P00076 Cytochrome c from Euglena gracilis
    43% identity, 79% coverage of query (90.1 bits)

P00032 Cytochrome c from Cornu aspersum (Brown garden snail) (Helix aspersa)
    38% identity, 77% coverage of query (90.1 bits)

P00077 Cytochrome c; Cytochrome c557 from Strigomonas oncopelti (Parasitic flagellate) (Crithidia oncopelti)
    42% identity, 79% coverage of query (89.4 bits)

P00075 Cytochrome c from Ulva intestinalis (Hollow green nori) (Enteromorpha intestinalis)
    40% identity, 82% coverage of query (89.0 bits)

P00049 Cytochrome c from Ustilago sphaerogena (Smut fungus)
    38% identity, 77% coverage of query (89.0 bits)

P22342 Cytochrome c from Euglena viridis (Cercaria viridis)
    43% identity, 79% coverage of query (88.2 bits)

CYC22_RHOTP / P86323 Cytochrome c2 from Rhodoplanes tepidamans (Rhodoplanes cryptolactis) (see paper)
    39% identity, 77% coverage of query (87.8 bits)

Build an alignment

Build an alignment for AO353_23370 and 100 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory