Searching for up to 100 curated homologs for AO356_13155 FitnessBrowser__pseudo5_N2C3_1:AO356_13155 (365 a.a.)
Found high-coverage hits (≥70%) to 24 curated proteins.
You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.
SPUD_PSEAB / Q02UB7 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain UCBPP-PA14) (see paper)
SPUD_PSEAE / Q9I6J1 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
73% identity, 100% coverage of query (548 bits)
3ttmA / Q9I6J1 Crystal structure of spud in complex with putrescine (see paper)
74% identity, 93% coverage of query (524 bits)
PotF / b0854 putrescine ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
PotF / P31133 putrescine ABC transporter periplasmic binding protein (EC 7.6.2.11) from Escherichia coli (strain K12) (see 5 papers)
POTF_ECOLI / P31133 Putrescine-binding periplasmic protein PotF from Escherichia coli (strain K12) (see 3 papers)
TC 3.A.1.11.2 / P31133 PotF aka B0854, component of Putrescine porter from Escherichia coli (see 7 papers)
57% identity, 98% coverage of query (428 bits)
SPUE_PSEAE / Q9I6J0 Spermidine-binding periplasmic protein SpuE from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
56% identity, 99% coverage of query (420 bits)
6ye7A E.Coli's putrescine receptor potf complexed with cadaverine
58% identity, 93% coverage of query (414 bits)
6ye6A E.Coli's putrescine receptor potf complexed with agmatine
58% identity, 93% coverage of query (414 bits)
6ye0B E.Coli's putrescine receptor potf complexed with putrescine
58% identity, 93% coverage of query (414 bits)
1a99A Putrescine receptor (potf) from e. Coli
58% identity, 93% coverage of query (414 bits)
7oyxB E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d y87s f88y s247d in complex with spermidine
57% identity, 93% coverage of query (408 bits)
7oywA / P31133 E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88l s247d in complex with spermidine (see paper)
57% identity, 93% coverage of query (405 bits)
7oyvA E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88a s247d in complex with spermidine
57% identity, 93% coverage of query (403 bits)
3ttnA / Q9I6J0 Crystal structures of polyamine receptors spud and spue from pseudomonas aeruginosa (see paper)
56% identity, 92% coverage of query (394 bits)
PAGBP_PSEAE / Q9I0P5 Putrescine/agmatine-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
46% identity, 92% coverage of query (336 bits)
PCABP_PSEAE / Q9HY16 Putrescine/cadaverine-binding protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
35% identity, 98% coverage of query (217 bits)
PotD / b1123 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655 (see 5 papers)
PotD / P0AFK9 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11) from Escherichia coli (strain K12) (see 11 papers)
POTD_ECOLI / P0AFK9 Spermidine/putrescine-binding periplasmic protein; SPBP from Escherichia coli (strain K12) (see paper)
TC 3.A.1.11.1 / P0AFK9 Spermidine/putrescine-binding periplasmic protein PotD aka B1123, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli (see 8 papers)
potD spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein PotD from Escherichia coli K12 (see 9 papers)
34% identity, 96% coverage of query (192 bits)
1poy1 / P0AFK9 Spermidine/putrescine-binding protein complexed with spermidine (dimer form) (see paper)
34% identity, 93% coverage of query (187 bits)
7xjnA / Q9KS37 Structure of vcpotd1 in complex with norspermidine
35% identity, 85% coverage of query (182 bits)
Q8YM93 ABC-type polyamine transporter (subunit 2/3) (EC 7.6.2.11) from Nostoc sp. PCC 7120 = FACHB-418 (see paper)
31% identity, 96% coverage of query (180 bits)
TC 3.A.1.11.7 / Q97Q45 Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
31% identity, 93% coverage of query (168 bits)
Build an alignment for AO356_13155 and 19 homologs with ≥ 30% identity
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A0A116LEI2 ABC-type polyamine transporter (subunit 1/4) (EC 7.6.2.11) from Streptococcus suis (see paper)
29% identity, 95% coverage of query (166 bits)
4eqbA 1.5 angstrom crystal structure of spermidine/putrescine abc transporter substrate-binding protein potd from streptococcus pneumoniae strain canada mdr_19a in complex with calcium and hepes
32% identity, 86% coverage of query (163 bits)
O83661 ABC-type putrescine transporter (EC 7.6.2.16) from Treponema pallidum (see paper)
30% identity, 84% coverage of query (135 bits)
NSPS_VIBCH / Q9KU25 Norspermidine sensor; Norspermidine-binding protein from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (see paper)
29% identity, 88% coverage of query (90.5 bits)
YdcS / b1440 putative ABC transporter periplasmic binding protein / polyhydroxybutyrate synthase from Escherichia coli K-12 substr. MG1655 (see 12 papers)
ydcS / P76108 putative ABC transporter periplasmic binding protein / polyhydroxybutyrate synthase (EC 2.3.1.304) from Escherichia coli (strain K12) (see 12 papers)
YDCS_ECOLI / P76108 Bifunctional polyhydroxybutyrate synthase / ABC transporter periplasmic binding protein; Poly-3-hydroxybutyrate synthase; PHB synthase; cPHB synthase; EC 2.3.1.- from Escherichia coli (strain K12) (see 3 papers)
27% identity, 88% coverage of query (84.0 bits)
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Lawrence Berkeley National Laboratory