Sites on a Tree

 

Searching for up to 100 curated homologs for AO356_28530 FitnessBrowser__pseudo5_N2C3_1:AO356_28530 (391 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

Q1QT83 mannonate dehydratase (EC 4.2.1.8) from Chromohalobacter salexigens (see paper)
    72% identity, 99% coverage of query (584 bits)

UxuA / b4322 D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli K-12 substr. MG1655 (see 8 papers)
uxuA / P24215 D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli (strain K12) (see 5 papers)
UXUA_ECOLI / P24215 Mannonate dehydratase; D-mannonate hydro-lyase; EC 4.2.1.8 from Escherichia coli (strain K12) (see paper)
P24215 mannonate dehydratase (EC 4.2.1.8) from Escherichia coli (see paper)
    66% identity, 99% coverage of query (548 bits)

4eacC / P24215 Crystal structure of mannonate dehydratase from escherichia coli strain k12 (see paper)
    66% identity, 99% coverage of query (548 bits)

4eayA Crystal structures of mannonate dehydratase from escherichia coli strain k12 complexed with d-mannonate
    66% identity, 99% coverage of query (548 bits)

A4VVI4 mannonate dehydratase (EC 4.2.1.8) from Streptococcus suis (see paper)
    38% identity, 100% coverage of query (256 bits)

uxuA / Q9WXS4 D-mannonate dehydratase (EC 4.2.1.8) from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
    38% identity, 99% coverage of query (253 bits)

3bdkA / A4VVI4 Crystal structure of streptococcus suis mannonate dehydratase complexed with substrate analogue
    37% identity, 100% coverage of query (245 bits)

3dbnA Crystal structure of the streptoccocus suis serotype2 d- mannonate dehydratase in complex with its substrate
    37% identity, 100% coverage of query (245 bits)

Build an alignment

Build an alignment for AO356_28530 and 8 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

No additional hits (below 30% identity) were found

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory