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Searching for up to 100 curated homologs for AZOBR_RS00190 FitnessBrowser__azobra:AZOBR_RS00190 (1618 a.a.)

Found high-coverage hits (≥70%) to 8 curated proteins.

Removed hits that are identical to the query, leaving 7

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

DHE2_HALED / E1V4J5 NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) (see paper)
    48% identity, 99% coverage of query (1456 bits)

Q8CJY0 glutamate dehydrogenase (EC 1.4.1.2) from Streptomyces coelicolor (see paper)
    51% identity, 98% coverage of query (1436 bits)

DHE2_PSEAE / Q9HZE0 NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
    47% identity, 100% coverage of query (1419 bits)

Psest_1944 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri RCH2
    48% identity, 98% coverage of query (1415 bits)

A0A0H3C571 glutamate dehydrogenase (EC 1.4.1.2) from Caulobacter vibrioides (see paper)
    46% identity, 94% coverage of query (1239 bits)

DHE2_MYCS2 / A0R1C2 NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
A0R1C2 glutamate dehydrogenase (EC 1.4.1.2) from Mycolicibacterium smegmatis (see paper)
    44% identity, 94% coverage of query (1145 bits)

DHE2_MYCTU / O53203 NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
    42% identity, 94% coverage of query (1076 bits)

Build an alignment

Build an alignment for AZOBR_RS00190 and 7 homologs with ≥ 30% identity

Select sequences

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory