Sites on a Tree

 

Searching for up to 100 curated homologs for AZOBR_RS06995 FitnessBrowser__azobra:AZOBR_RS06995 (297 a.a.)

Found high-coverage hits (≥70%) to 50 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

No hits had 30% identity

Change minimum %identity:

Additional hits (identity < 30%)

KPRS_METJA / Q58761 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
Q58761 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Methanocaldococcus jannaschii (see paper)
    27% identity, 95% coverage of query (111 bits)

Q97Z86 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Saccharolobus solfataricus (see paper)
    29% identity, 89% coverage of query (111 bits)

Q97Z86 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus)
    29% identity, 89% coverage of query (111 bits)

KPRS_THEKO / O52958 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
    36% identity, 75% coverage of query (108 bits)

1u9zA / Q58761 Crystal structure of phosphoribosyl diphosphate synthase complexed with amp and ribose 5-phosphate (see paper)
    26% identity, 95% coverage of query (108 bits)

4twbA / Q97Z86 Sulfolobus solfataricus ribose-phosphate pyrophosphokinase (see paper)
    30% identity, 89% coverage of query (107 bits)

3mbiA / Q97CA5 Crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase from thermoplasma volcanium in complex with adp-mg2+ and ribose 5- phosphate (see paper)
    27% identity, 80% coverage of query (94.0 bits)

KPRS_THEVO / Q97CA5 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) (see paper)
Q97CA5 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Thermoplasma volcanium (see paper)
    27% identity, 80% coverage of query (94.0 bits)

3mbiD Crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase from thermoplasma volcanium in complex with adp-mg2+ and ribose 5- phosphate
    27% identity, 80% coverage of query (94.0 bits)

3lpnA Crystal structure of the phosphoribosylpyrophosphate (prpp) synthetase from thermoplasma volcanium in complex with an atp analog (ampcpp).
    27% identity, 80% coverage of query (93.6 bits)

A3MV85 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Pyrobaculum calidifontis (see paper)
    38% identity, 72% coverage of query (89.7 bits)

DnaR / b1207 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli K-12 substr. MG1655 (see 6 papers)
prs / P0A717 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli (strain K12) (see 27 papers)
KPRS_ECOLI / P0A717 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Escherichia coli (strain K12) (see 7 papers)
P0A719 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Escherichia coli (see paper)
    28% identity, 88% coverage of query (88.6 bits)

6asvC / P0A717 E. Coli prpp synthetase (see paper)
    28% identity, 88% coverage of query (88.6 bits)

4s2uA Crystal structure of the phosphorybosylpyrophosphate synthetase from e. Coli
    29% identity, 88% coverage of query (88.6 bits)

KPRS_SALTY / P0A1V6 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see 4 papers)
    28% identity, 88% coverage of query (88.2 bits)

KPRS2_STRP6 / Q5XC85 Putative ribose-phosphate pyrophosphokinase 2; RPPK 2; 5-phospho-D-ribosyl alpha-1-diphosphate synthase 2; Phosphoribosyl diphosphate synthase 2; Phosphoribosyl pyrophosphate synthase 2; P-Rib-PP synthase 2; PRPP synthase 2; PRPPase 2; EC 2.7.6.1 from Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
    25% identity, 94% coverage of query (87.4 bits)

KPRS_MYCGE / P47304 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37) (Mycoplasmoides genitalium) (see paper)
    25% identity, 86% coverage of query (87.0 bits)

7xmvA E.Coli phosphoribosylpyrophosphate (prpp) synthetase type a(amp/adp) filament bound with adp, amp and r5p
    28% identity, 88% coverage of query (83.2 bits)

7xmuA E.Coli phosphoribosylpyrophosphate (prpp) synthetase type a filament bound with adp, pi and r5p
    28% identity, 88% coverage of query (83.2 bits)

KPRS_MYCTU / P9WKE3 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 3 papers)
    29% identity, 84% coverage of query (76.6 bits)

Q63XL8 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Burkholderia pseudomallei (strain K96243)
    26% identity, 95% coverage of query (75.5 bits)

6nfeB / Q5ZY30 Crystal structure of ribose-phosphate pyrophosphokinase from legionella pneumophila with bound amp, adp, and ribose-5-phosphate
    26% identity, 88% coverage of query (74.3 bits)

6nfeA Crystal structure of ribose-phosphate pyrophosphokinase from legionella pneumophila with bound amp, adp, and ribose-5-phosphate
    26% identity, 88% coverage of query (71.2 bits)

3dahC / Q63XL8 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from burkholderia pseudomallei (see paper)
    25% identity, 90% coverage of query (70.5 bits)

Q5SHU3 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Thermus thermophilus (see paper)
    27% identity, 80% coverage of query (65.1 bits)

7pn0A / Q5SHU3 Crystal structure of the phosphorybosylpyrophosphate synthetase ii from thermus thermophilus at r32 space group
    27% identity, 80% coverage of query (65.1 bits)

KPRS_BACSU / P14193 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Bacillus subtilis (strain 168) (see 5 papers)
    21% identity, 97% coverage of query (65.1 bits)

5t3oA Crystal structure of the phosphorybosylpyrophosphate synthetase ii from thermus thermophilus
    27% identity, 80% coverage of query (65.1 bits)

A0R3C8 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Mycolicibacterium smegmatis (see paper)
    27% identity, 90% coverage of query (64.3 bits)

E7EAU9 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Bacillus amyloliquefaciens (see paper)
    21% identity, 97% coverage of query (60.8 bits)

1dkuA Crystal structures of bacillus subtilis phosphoribosylpyrophosphate synthetase: molecular basis of allosteric inhibition and activation.
    22% identity, 82% coverage of query (60.1 bits)

PRPS2 / P11908 Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1) from Homo sapiens (see 2 papers)
    23% identity, 89% coverage of query (58.5 bits)

PRPS1L1 / P21108 Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1) from Homo sapiens (see 3 papers)
    22% identity, 92% coverage of query (58.2 bits)

KPR4_YEAST / P38063 Ribose-phosphate pyrophosphokinase 4; Phosphoribosyl pyrophosphate synthase 4; EC 2.7.6.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 4 papers)
    22% identity, 93% coverage of query (58.2 bits)

1ibsB / P14193 Phosphoribosyldiphosphate synthetase in complex with cadmium ions (see paper)
    20% identity, 97% coverage of query (57.8 bits)

prs1 / CAB43599.1 phosphoribosyl pyrophosphate synthase from Spinacia oleracea (see paper)
    26% identity, 75% coverage of query (57.8 bits)

KPR2_YEAST / P38620 Ribose-phosphate pyrophosphokinase 2; Phosphoribosyl pyrophosphate synthase 2; EC 2.7.6.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 4 papers)
    21% identity, 88% coverage of query (57.4 bits)

1ibsA Phosphoribosyldiphosphate synthetase in complex with cadmium ions
    20% identity, 97% coverage of query (57.4 bits)

PRPS1 / P60891 Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) from Homo sapiens (see 5 papers)
PRPS1_HUMAN / P60891 Ribose-phosphate pyrophosphokinase 1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I; EC 2.7.6.1 from Homo sapiens (Human) (see 7 papers)
PRPS1_MOUSE / Q9D7G0 Ribose-phosphate pyrophosphokinase 1; Phosphoribosyl pyrophosphate synthase I; PRS-I; EC 2.7.6.1 from Mus musculus (Mouse) (see paper)
P60891 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Homo sapiens (see 4 papers)
    22% identity, 92% coverage of query (56.6 bits)

8dbeA / P60891 Human prps1 with adp; hexamer (see paper)
    23% identity, 86% coverage of query (56.6 bits)

8dbkB Human prps1 with phosphate, atp, and r5p; hexamer with resolved catalytic loops
    23% identity, 86% coverage of query (56.6 bits)

Q08CA5 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Danio rerio (see paper)
    23% identity, 86% coverage of query (56.2 bits)

prs2 / CAB43600.1 phosphoribosyl pyrophosphate synthase isozyme 2 from Spinacia oleracea (see paper)
    24% identity, 84% coverage of query (56.2 bits)

2hcrA Crystal structure of human phosphoribosyl pyrophosphate synthetase 1 in complex with amp(atp), cadmium and sulfate ion
    23% identity, 92% coverage of query (55.5 bits)

Q4KME9 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Danio rerio (see paper)
    22% identity, 89% coverage of query (54.7 bits)

8dbgA Human prps1 with phosphate and atp; hexamer
    23% identity, 86% coverage of query (53.1 bits)

7yk1A Structural basis of human prps2 filaments
    22% identity, 89% coverage of query (52.0 bits)

H9D1K2 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Culex pipiens (see paper)
    21% identity, 92% coverage of query (48.5 bits)

Q9VT33 ribose-phosphate diphosphokinase (EC 2.7.6.1) from Drosophila melanogaster (see paper)
    21% identity, 92% coverage of query (48.1 bits)

KPR2_SCHPO / O94413 Ribose-phosphate pyrophosphokinase 2; Phosphoribosyl pyrophosphate synthase 2; EC 2.7.6.1 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
    22% identity, 82% coverage of query (46.6 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory