Sites on a Tree

 

Searching for up to 100 curated homologs for AZOBR_RS23050 FitnessBrowser__azobra:AZOBR_RS23050 (515 a.a.)

Found high-coverage hits (≥70%) to 48 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

ILVX_MYCTU / O53554 Putative acetolactate synthase large subunit IlvX; ALS; Acetohydroxy-acid synthase large subunit; AHAS; EC 2.2.1.6 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
O53554 acetolactate synthase (EC 2.2.1.6) from Mycobacterium tuberculosis (see paper)
    51% identity, 100% coverage of query (417 bits)

Build an alignment

Build an alignment for AZOBR_RS23050 and 1 homologs with ≥ 30% identity

Select sequences

Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

Or download the sequences

Change minimum %identity:

Additional hits (identity < 30%)

6a50A Structure of benzoylformate decarboxylases in complex with cofactor tpp
    29% identity, 99% coverage of query (155 bits)

mdlC / P20906 MdlC (EC 4.1.1.7) from Pseudomonas putida (see 2 papers)
P20906 benzoylformate decarboxylase (EC 4.1.1.7) from Pseudomonas putida (see 16 papers)
    29% identity, 99% coverage of query (152 bits)

3fznA Intermediate analogue in benzoylformate decarboxylase
    29% identity, 99% coverage of query (152 bits)

1bfdA Benzoylformate decarboxylase from pseudomonas putida
    29% identity, 99% coverage of query (152 bits)

5deiA Benzoylformate decarboxylase from pseudomonas putida
    29% identity, 99% coverage of query (152 bits)

3fsjX Crystal structure of benzoylformate decarboxylase in complex with the inhibitor mbp
    29% identity, 99% coverage of query (152 bits)

3f6bX Crystal structure of benzoylformate decarboxylase in complex with the pyridyl inhibitor paa
    29% identity, 99% coverage of query (152 bits)

1mczA Benzoylformate decarboxylase from pseudomonas putida complexed with an inhibitor, r-mandelate
    29% identity, 99% coverage of query (152 bits)

1pi3A E28q mutant benzoylformate decarboxylase from pseudomonas putida
    29% identity, 99% coverage of query (150 bits)

6qsiA / Q4KB02 Pseudomonas fluorescens pf-5 thiamine diphosphate-dependent 4- hydroxybenzoylformate decarboxylase (see paper)
    30% identity, 97% coverage of query (149 bits)

dpgB / A3RJV5 benzoylformate decarboxylase monomer (EC 4.1.1.7) from Stutzerimonas stutzeri (see paper)
    29% identity, 98% coverage of query (146 bits)

bfd / CAK95977.1 benzoylformate decarboxylase from Pseudomonas putida (see paper)
    30% identity, 97% coverage of query (143 bits)

bfd / CAK95976.1 benzoylformate decarboxylase from Pseudomonas putida (see paper)
    30% identity, 97% coverage of query (140 bits)

7orxCCC / Q0SCE8 jostii RHA1 thiamine diphosphate-dependent 4-hydroxybenzoylformate decarboxylase
    29% identity, 99% coverage of query (129 bits)

4q9dB / A0QSU7 X-ray structure of a putative thiamin diphosphate-dependent enzyme isolated from mycobacterium smegmatis (see paper)
    27% identity, 98% coverage of query (127 bits)

4k9qA / A4SXU0 The crystal structure of benzoylformate decarboxylase from polynucleobacter necessarius
    24% identity, 98% coverage of query (102 bits)

Q8U2A4 acetolactate synthase (EC 2.2.1.6) from Pyrococcus furiosus (see paper)
    26% identity, 97% coverage of query (99.8 bits)

Q8RL88 acetolactate synthase (subunit 2/2) (EC 2.2.1.6) from Geobacillus stearothermophilus (see paper)
ilvB / AAL99356.1 acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus (see paper)
    26% identity, 99% coverage of query (88.6 bits)

4qq8C / Q9F4L3 Crystal structure of the formolase fls in space group p 43 21 2 (see paper)
    27% identity, 100% coverage of query (86.3 bits)

Q5S3P7 acetolactate synthase (EC 2.2.1.6) from Streptomyces cinnamonensis (see 2 papers)
ilvB / AAV52901.1 acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis (see paper)
    24% identity, 100% coverage of query (83.2 bits)

3d7kA Crystal structure of benzaldehyde lyase in complex with the inhibitor mbp
    26% identity, 100% coverage of query (81.6 bits)

ILVG_ECOLI / P0DP90 Acetolactate synthase isozyme 2 large subunit; AHAS-II; ALS-II; Acetohydroxy-acid synthase II large subunit; EC 2.2.1.6 from Escherichia coli (strain K12) (see 2 papers)
ilvG / GB|CAA28573.1 acetolactate synthase isozyme 2 large subunit; EC 2.2.1.6 from Escherichia coli K12 (see 8 papers)
    24% identity, 100% coverage of query (81.3 bits)

6lpiB / P08142 Crystal structure of ahas holo-enzyme (see paper)
    25% identity, 96% coverage of query (80.9 bits)

1y9dD / P37063 Pyruvate oxidase variant v265a from lactobacillus plantarum (see paper)
    24% identity, 99% coverage of query (75.5 bits)

ILVB1_MYCTU / P9WG41 Acetolactate synthase large subunit IlvB1; ALS; Acetohydroxy-acid synthase large subunit; AHAS; EC 2.2.1.6 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 4 papers)
P9WG41 acetolactate synthase (subunit 2/2) (EC 2.2.1.6) from Mycobacterium tuberculosis (see paper)
    24% identity, 100% coverage of query (74.7 bits)

4feeA High-resolution structure of pyruvate oxidase in complex with reaction intermediate 2-hydroxyethyl-thiamin diphosphate carbanion-enamine, crystal b (see paper)
    23% identity, 99% coverage of query (70.5 bits)

P37063 pyruvate oxidase (EC 1.2.3.3) from Lactiplantibacillus plantarum (see 2 papers)
    23% identity, 99% coverage of query (70.5 bits)

1powA The refined structures of a stabilized mutant and of wild-type pyruvate oxidase from lactobacillus plantarum
    23% identity, 99% coverage of query (70.5 bits)

P51853 benzoin aldolase (EC 4.1.2.38) from Pseudomonas fluorescens (see 4 papers)
bznB / AAA50176.1 benzaldehyde lyase from Pseudomonas fluorescens (see paper)
    26% identity, 78% coverage of query (70.1 bits)

Q836A5 acetolactate synthase (EC 2.2.1.6) from Enterococcus faecalis (see 2 papers)
    22% identity, 99% coverage of query (70.1 bits)

2ezuA Pyruvate oxidase variant f479w in complex with reaction intermediate 2-acetyl-thiamin diphosphate
    23% identity, 99% coverage of query (69.3 bits)

2ez9A Pyruvate oxidase variant f479w in complex with reaction intermediate analogue 2-phosphonolactyl-thiamin diphosphate
    23% identity, 99% coverage of query (69.3 bits)

2ez8A Pyruvate oxidase variant f479w in complex with reaction intermediate 2-lactyl-thiamin diphosphate
    23% identity, 99% coverage of query (69.3 bits)

2ez4B Pyruvate oxidase variant f479w
    23% identity, 99% coverage of query (69.3 bits)

A4YXN1 oxalyl-CoA decarboxylase (EC 4.1.1.8) from Bradyrhizobium japonicum (see paper)
    24% identity, 100% coverage of query (68.6 bits)

1ozfA The crystal structure of klebsiella pneumoniae acetolactate synthase with enzyme-bound cofactors
    23% identity, 99% coverage of query (68.6 bits)

5d6rB Acetolactate synthase from klebsiella pneumoniae in complex with mechanism-based inhibitor
    23% identity, 99% coverage of query (68.2 bits)

5dx6A Acetolactate synthase from klebsiella pneumoniae soaked with beta- fluoropyruvate
    23% identity, 99% coverage of query (65.1 bits)

budB / P27696 catabolic acetolactate synthase (EC 2.2.1.6) from Klebsiella pneumoniae (see 2 papers)
    23% identity, 99% coverage of query (64.3 bits)

1ozgA The crystal structure of klebsiella pneumoniae acetolactate synthase with enzyme-bound cofactor and with an unusual intermediate
    23% identity, 99% coverage of query (64.3 bits)

ilvB / AAB38426.1 acetolactate synthase from Mycobacterium avium (see paper)
    23% identity, 98% coverage of query (63.5 bits)

5wdgA Acetolactate synthase from klebsiella pneumoniae in complex with a reaction intermediate
    23% identity, 99% coverage of query (59.7 bits)

ipdC / P23234 indole-3-pyruvate decarboxylase subunit (EC 4.1.1.74) from Enterobacter cloacae (see 2 papers)
DCIP_ENTCL / P23234 Indole-3-pyruvate decarboxylase; Indolepyruvate decarboxylase; EC 4.1.1.74 from Enterobacter cloacae (see paper)
P23234 indolepyruvate decarboxylase (EC 4.1.1.74) from Enterobacter cloacae (see paper)
    25% identity, 86% coverage of query (55.8 bits)

1ovmA / P23234 Crystal structure of indolepyruvate decarboxylase from enterobacter cloacae (see paper)
    24% identity, 86% coverage of query (54.3 bits)

3ey9A / P07003 Structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from escherichia coli (see paper)
    23% identity, 86% coverage of query (53.5 bits)

PoxB / b0871 pyruvate oxidase (EC 1.2.5.1) from Escherichia coli K-12 substr. MG1655 (see 70 papers)
poxB / P07003 pyruvate oxidase (EC 1.2.5.1) from Escherichia coli (strain K12) (see 69 papers)
POXB_ECOLI / P07003 Pyruvate dehydrogenase [ubiquinone]; Pyruvate oxidase; POX; Pyruvate:ubiquinone-8 oxidoreductase; EC 1.2.5.1 from Escherichia coli (strain K12) (see 13 papers)
P07003 pyruvate dehydrogenase (quinone) (EC 1.2.5.1) from Escherichia coli (see paper)
    23% identity, 86% coverage of query (53.5 bits)

7b2eA / C5AX46 Quadruple mutant of oxalyl-coa decarboxylase from methylorubrum extorquens with bound tpp and adp (see paper)
    23% identity, 100% coverage of query (52.0 bits)

Or start over

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory