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Searching for up to 100 curated homologs for AZOBR_RS30430 FitnessBrowser__azobra:AZOBR_RS30430 (319 a.a.)

Found high-coverage hits (≥70%) to 39 curated proteins.

You can add additional sequences or change the %identity threshold for inclusion. Once you have selected sequences, you can build an alignment and a tree.

Hits with ≥ 30% identity

1wogA / Q9RZ04 Crystal structure of agmatinase reveals structural conservation and inhibition mechanism of the ureohydrolase superfamily (see paper)
    31% identity, 79% coverage of query (124 bits)

3nipB / Q9I6K2 Crystal structure of pseudomonas aeruginosa guanidinopropionase complexed with 1,6-diaminohexane (see paper)
    31% identity, 92% coverage of query (116 bits)

GPUA_PSEAE / Q9I6K2 Guanidinopropionase; EC 3.5.3.17 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
Q9I6K2 Guanidinopropionase (EC 3.5.3.17) from Pseudomonas aeruginosa (see paper)
    31% identity, 92% coverage of query (116 bits)

3niqA Crystal structure of pseudomonas aeruginosa guanidinopropionase
    31% identity, 92% coverage of query (116 bits)

Build an alignment

Build an alignment for AZOBR_RS30430 and 4 homologs with ≥ 30% identity

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Add sequences from UniProt, PDB, RefSeq, or MicrobesOnline (separate identifiers with commas or spaces):

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Additional hits (identity < 30%)

3pzlB / Q97BB8 The crystal structure of agmatine ureohydrolase of thermoplasma volcanium
    29% identity, 93% coverage of query (111 bits)

AGMAT / Q9BSE5 agmatinase (EC 3.5.3.11) from Homo sapiens (see paper)
GDAH_HUMAN / Q9BSE5 Guanidino acid hydrolase, mitochondrial; Arginase, mitochondrial; Guanidinobutyrase, mitochondrial; Guanidinopropionase, mitochondrial; EC 3.5.3.-; EC 3.5.3.1; EC 3.5.3.7; EC 3.5.3.17 from Homo sapiens (Human) (see 3 papers)
Q9BSE5 agmatinase (EC 3.5.3.11) from Homo sapiens (see paper)
    28% identity, 92% coverage of query (108 bits)

pah / P0DJQ3 proclavaminate amidino hydrolase subunit (EC 3.5.3.22) from Streptomyces clavuligerus (see paper)
PAH_STRCL / P0DJQ3 Proclavaminate amidinohydrolase; Proclavaminic acid amidino hydrolase; EC 3.5.3.22 from Streptomyces clavuligerus (see paper)
    30% identity, 71% coverage of query (106 bits)

1gq6B / P0DJQ3 Proclavaminate amidino hydrolase from streptomyces clavuligerus (see paper)
    30% identity, 71% coverage of query (106 bits)

3lhlA / Q18A84 Crystal structure of a putative agmatinase from clostridium difficile
    27% identity, 79% coverage of query (105 bits)

SPEB_METJA / Q57757 Agmatinase; EC 3.5.3.11 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
Q57757 agmatinase (EC 3.5.3.11) from Methanocaldococcus jannaschii (see paper)
    30% identity, 84% coverage of query (98.6 bits)

SPEB_PROMI / Q7X3P1 Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis (see paper)
    27% identity, 96% coverage of query (95.5 bits)

AGMT_PYRHO / O57839 Agmatinase; EC 3.5.3.11 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see paper)
    29% identity, 90% coverage of query (91.3 bits)

CH_124010 agmatinase from Magnaporthe grisea 70-15 (see 3 papers)
    26% identity, 71% coverage of query (86.3 bits)

SpeB / b2937 agmatinase (EC 3.5.3.11) from Escherichia coli K-12 substr. MG1655 (see 2 papers)
speB / P60651 agmatinase (EC 3.5.3.11) from Escherichia coli (strain K12) (see 35 papers)
SPEB_ECOLI / P60651 Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli (strain K12) (see 2 papers)
speB / RF|NP_417412 agmatinase; EC 3.5.3.11 from Escherichia coli K12 (see 7 papers)
    28% identity, 87% coverage of query (85.5 bits)

7lbaB / P60651 E. Coli agmatinase (see paper)
    28% identity, 87% coverage of query (85.1 bits)

7lolA The structure of agmatinase from e. Coli at 1.8 a displaying urea and agmatine
    28% identity, 87% coverage of query (85.1 bits)

7loxA The structure of agmatinase from e. Coli at 3.2 a displaying guanidine in the active site
    29% identity, 76% coverage of query (84.7 bits)

TK0882 / Q5JI38 aminopropylagmatine ureohydrolase (EC 3.5.3.24) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (see paper)
SPEBH_THEKO / Q5JI38 N(1)-aminopropylagmatine ureohydrolase; Agmatinase; Protein SpeB homolog; EC 3.5.3.24; EC 3.5.3.11 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
Q5JI38 N1-aminopropylagmatine ureohydrolase (EC 3.5.3.24) from Thermococcus kodakarensis (see paper)
    27% identity, 93% coverage of query (83.2 bits)

gdmH / P73270 Ni2+-dependent guanidine hydrolase monomer from Synechocystis sp. (strain PCC 6803 / Kazusa) (see 2 papers)
    23% identity, 95% coverage of query (80.5 bits)

KlGBU1 / Q6CIB4 guanidinobutyrase (EC 3.5.3.7) from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (see paper)
GBU1_KLULA / Q6CIB4 Guanidinobutyrase; EC 3.5.3.7 from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica) (see paper)
    26% identity, 97% coverage of query (80.5 bits)

7esrA / P73270 Crystal structure of synechocystis sp pcc6803 guanidinium hydrolase (r32) (see paper)
    23% identity, 95% coverage of query (80.1 bits)

4dz4B / Q2T3W4 X-ray crystal structure of a hypothetical agmatinase from burkholderia thailandensis (see paper)
    29% identity, 74% coverage of query (79.0 bits)

W8R465 guanidinobutyrase (EC 3.5.3.7) from Aspergillus niger (see paper)
    28% identity, 71% coverage of query (77.8 bits)

2ef5A / Q5SI78 Crystal structure of the arginase from thermus thermophilus
    28% identity, 79% coverage of query (77.4 bits)

4mynA / Q4DSA0 Crystal structure of trypanosoma cruzi formiminoglutamase n114h variant with mn2+2 (see paper)
    24% identity, 81% coverage of query (65.1 bits)

N515DRAFT_0348 Arginase (EC 3.5.3.1) from Dyella japonica UNC79MFTsu3.2
    27% identity, 72% coverage of query (64.7 bits)

HUTG_BACSU / P42068 Formimidoylglutamase; Formiminoglutamase; Formiminoglutamate hydrolase; N-formimino-L-glutamate formiminohydrolase; EC 3.5.3.8 from Bacillus subtilis (strain 168) (see paper)
    22% identity, 84% coverage of query (63.5 bits)

3m1rD / P42068 The crystal structure of formimidoylglutamase from bacillus subtilis subsp. Subtilis str. 168
    22% identity, 84% coverage of query (63.5 bits)

Q4DSA0 formimidoylglutamase (EC 3.5.3.8) from Trypanosoma cruzi (see paper)
    23% identity, 81% coverage of query (62.0 bits)

ARGI_BACCD / P53608 Arginase; EC 3.5.3.1 from Bacillus caldovelox (see paper)
P53608 arginase (EC 3.5.3.1) from [Bacillus] caldovelox (see paper)
1cevA / P53608 Arginase from bacillus caldovelox, native structure at ph 5.6 (see paper)
    24% identity, 77% coverage of query (56.2 bits)

5cevA Arginase from bacillus caldevelox, l-lysine complex
    24% identity, 77% coverage of query (56.2 bits)

4cevA Arginase from bacillus caldevelox, l-ornithine complex
    24% identity, 77% coverage of query (56.2 bits)

3cevA Arginase from bacillus caldevelox, complexed with l-arginine
    24% identity, 77% coverage of query (56.2 bits)

2cevB Arginase from bacillus caldevelox, native structure at ph 8.5
    24% identity, 77% coverage of query (56.2 bits)

A4IJM8 arginase (EC 3.5.3.1) from Geobacillus thermodenitrificans (see paper)
    24% identity, 77% coverage of query (55.5 bits)

ARGI_KLULA / Q6CLS8 Arginase; EC 3.5.3.1 from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica) (see paper)
    23% identity, 85% coverage of query (55.1 bits)

ARGI1_MOUSE / Q61176 Arginase-1; Liver-type arginase; Type I arginase; EC 3.5.3.1 from Mus musculus (Mouse) (see 10 papers)
Q61176 arginase (EC 3.5.3.1) from Mus musculus (see paper)
    22% identity, 81% coverage of query (55.1 bits)

car1 / RF|NP_595133.1 arginase Car1; EC 3.5.3.1 from Schizosaccharomyces pombe (see 3 papers)
    24% identity, 76% coverage of query (54.3 bits)

ARGI1_XENLA / P30759 Arginase-1; Arginase, hepatic; Type I arginase; EC 3.5.3.1 from Xenopus laevis (African clawed frog) (see paper)
    26% identity, 71% coverage of query (48.1 bits)

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory